Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F06f
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0099 + 15206282-15206917 29 2.9
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 28 3.9
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 5.1
09_06_0322 - 22329897-22330078,22330569-22331928 27 6.8
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 27 6.8
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 27 6.8
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 6.8
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 27 6.8
12_01_0880 - 8447941-8447981,8448928-8449261 27 8.9
03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321 27 8.9
02_02_0476 - 10751647-10753323 27 8.9
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 276 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 443
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 188 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMP 60
GR D DD R P R+P +G G G RE + P
Sbjct: 191 GRSDDIDDWSRDKKPMPSRYPSLGSGGGGGGGFRESPGFRDSP 233
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 256 PATRPTSPESCSIRRKSGAVPAAPHRPLSK 345
P T+PT+P S + S P P +P+ +
Sbjct: 167 PTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +3
Query: 282 VLLDKKEVWSGAG--SATSAAFKVKKGGRYQMQVELCNS 392
VLLDK ++GA +AT+A K ++G +++QV LC +
Sbjct: 31 VLLDKLAYFAGADVRNATTATSKTREG--HEIQVTLCTA 67
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 409 LELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFLSSRTLDLSAASP 257
+E H L + YL TL AADVA+PA Q +R D+ P
Sbjct: 1 MERHQLLLLPGCLLLYLGAIATLAAADVAIPAGGQPPGCRTRCGDVDIPYP 51
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 176 DFDDRERALAPAEV-RFPWRAAGADGE 99
DF D E +AP E+ RFP R G GE
Sbjct: 787 DFKDEELDIAPIEIRRFPRRGRGHYGE 813
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 294 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVV 431
++E+WSGA SA K KK + ++ DG S ++ V
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAV 664
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 396 GCSSSEGVEIVVADTDGSHLRPLDYSIGEKITXQAD 503
GCS+ VE V+ D DG ++Y + E++ +D
Sbjct: 193 GCSNIAAVEQVLKDMDGDIDAAIEYMLAEQLILGSD 228
>12_01_0880 - 8447941-8447981,8448928-8449261
Length = 124
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 259 ATRPTSPESCSIRRKSGAVPAAPH-RPLSK*RRAEDTRCRSSSATQT 396
A RPT PE+ S R A AAP P++ A RC T
Sbjct: 15 ALRPTDPETASAPRADPAAAAAPRVYPVAASTPARIRRCDDGGGRPT 61
>03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321
Length = 90
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 125 WRAAGADGERGHREYERYHPMPHNWFYKK 39
WRA G RG Y + P PH +++
Sbjct: 41 WRAIGVQQSRGWVHYAIHRPEPHIMLFRR 69
>02_02_0476 - 10751647-10753323
Length = 558
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 161 ERALAPAEVRFPWRAAGADGERGHREYERYHPMPHNWFY 45
+ A A A V P + GE H + HP PH++ Y
Sbjct: 193 QTAAAAAAVAPPLPMLSSYGEPPHEHFSDDHPPPHSYTY 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,130
Number of Sequences: 37544
Number of extensions: 235920
Number of successful extensions: 838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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