Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F06f
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   0.74 
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         28   5.3  
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)           27   9.2  

>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 345 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 452
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = -1

Query: 454  KWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFT---LKAADVALPAPLQTSFLSSR 284
            +W   ++  + +  S  L+PS    S  IW  PP      L    V +P P+Q   ++ R
Sbjct: 1745 QWRTILTEISYTVNSRPLYPS----SDAIWENPPITPNDLLIGPHVGVPVPIQEDKVNPR 1800

Query: 283  TLDLSAASPVHTF 245
             L  S    VH F
Sbjct: 1801 HLHKSTQQRVHHF 1813


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 360 RYQMQVELCNSDGCS 404
           RY++++++CNS GCS
Sbjct: 628 RYEVEMKMCNSAGCS 642


>SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)
          Length = 637

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +3

Query: 132 PNLGWGERTFAIVEVNQAATAYNQLVTKK--DAADVSVNWNVWTGDAADKSRVLLDKKEV 305
           PN+ W +    I ++N    A  +   KK      +SV    WT D  DK   + DK   
Sbjct: 202 PNMPWDDTELWIGKLNSTGDALEKNTIKKVSGGVGISVMLPKWTPD--DKLLYINDKTNW 259

Query: 306 WS 311
           W+
Sbjct: 260 WN 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,854
Number of Sequences: 59808
Number of extensions: 241143
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)