Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F06f
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   0.85 
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   2.6  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   6.0  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   6.0  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   6.0  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   6.0  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    27   8.0  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -1

Query: 466  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 290
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 289  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 200
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +3

Query: 243 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 422
           W  W G   +   +   KKEV      + + A K+ K  R        +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471

Query: 423 IVVADTDGSHLRPLDYSI 476
                +      P  Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +3

Query: 168 VEVNQAATAYNQLVTKKDAADVSVNWNVW 254
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 117  GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 245
            G   K N+G GER    ++ +QAA +   L  + +     DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 117  GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 245
            G   K N+G GER    ++ +QAA +   L  + +     DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 117  GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 245
            G   K N+G GER    ++ +QAA +   L  + +     DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 117  GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 245
            G   K N+G GER    ++ +QAA +   L  + +     DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate receptor
            family (ampa)protein 4 protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 244  GTCGPATRPTSPESCSIRRKSGAVPAAPHRPLSK*RR 354
            GT     RP S     +RR S  +PAA H  LS+ R+
Sbjct: 911  GTPISRDRPPSISRAGLRRLSRMLPAATHEQLSRFRQ 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,504
Number of Sequences: 27780
Number of extensions: 173464
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)