Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F06f
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.46 
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    30   0.80 
At5g26820.1 68418.m03200 ferroportin-related low similarity to f...    27   7.5  
At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK...    27   7.5  
At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id...    27   7.5  
At1g55325.1 68414.m06320 expressed protein                             27   7.5  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    27   9.9  
At1g06250.1 68414.m00661 lipase class 3 family protein similar t...    27   9.9  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 318 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHL 455
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +3

Query: 168 VEVNQAATAYNQLVTKKDAADVSVNWNVWTG-DAADKSRVLLDKKEVWSGAGSATSAAFK 344
           V+V +     +  V+K      S+N + W+  D   K+ +L+ K+   S +G+ +   + 
Sbjct: 307 VDVEKVGADTDLYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSKERALS-SGTYSIGVYG 365

Query: 345 VKKGGRYQMQVELCNS-DGCSSSEGVEIVVADTDGSHLRPLDYSI 476
            K   +YQ+ V +  S DG    E      +D D    R   +SI
Sbjct: 366 FKGTVKYQVSVLVQESIDGAKVGERAVSSSSDVDTVECRNCKHSI 410


>At5g26820.1 68418.m03200 ferroportin-related low similarity to
           ferroportin1 [Danio rerio] GI:7109245
          Length = 598

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 322 LPAPLQTSFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL*AV 188
           +P  +  + + +    LSA   +H + +  TSA+S L+  W  A+
Sbjct: 212 VPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSASSILLQPWFFAL 256


>At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK,
           putative similar to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 83

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 125 WRAAGADGERGHREYERYHPMPHNWFYKK 39
           WRA G    RG   Y  + P PH   +++
Sbjct: 41  WRAIGVQQSRGWVHYAIHRPEPHIMLFRR 69


>At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1)
           identical to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 87

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 125 WRAAGADGERGHREYERYHPMPHNWFYKK 39
           WRA G    RG   Y  + P PH   +++
Sbjct: 41  WRAIGVQQSRGWVHYAVHRPEPHIMLFRR 69


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424  ISTPSLE-LHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFLSSRTL 278
            I +P++  LHPS LQ  TC+    P             PL T F+ S+ +
Sbjct: 1754 IPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGYAIPLSTGFVVSKAV 1803


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 249 VWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVE 380
           VWTGD  D  RV +  +EV  G G        +K+  R   +VE
Sbjct: 379 VWTGDPRDDPRVEVSPREV--GVGPLLEFRADLKRLDRLPTKVE 420


>At1g06250.1 68414.m00661 lipase class 3 family protein similar to
           lipase GB:AAD01804 GI:4103627 from [Dianthus
           caryophyllus]; contains Pfam profile PF01764: Lipase
          Length = 423

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 216 KDAADVSVNWNVWTGDAADKSRVLLDKKEV---WSG 314
           KDA+ V  NW  +   A D+ + +L ++++   W G
Sbjct: 105 KDASRVQTNWMGYIAVATDQGKAMLGRRDIVVAWRG 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,555,597
Number of Sequences: 28952
Number of extensions: 166990
Number of successful extensions: 451
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)