Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 107 7e-25
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 1.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.8
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 6.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 6.8
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 6.8
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 6.8
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 25 9.0
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 9.0
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 107 bits (258), Expect = 7e-25
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +1
Query: 34 IKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVY 213
I IK G+VPQHIAF+MDGNRR+A++ ++ GH GF+ L LK CL LG+ EV+ +
Sbjct: 26 INTIKRGKVPQHIAFVMDGNRRWARQRRMETIEGHSSGFEALKSLLKVCLKLGVKEVSAF 85
Query: 214 AFSIENFKRSKEEVDALMELAREKFQNL 297
FSIENFKRSK EVD LME+A+ +
Sbjct: 86 TFSIENFKRSKYEVDMLMEIAKNSLTQI 113
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 196 VFLNQGTTLRFQKACQNLYDDQYSCRHYFF 107
V+ N+ + L+ ++ Q+LY YS +HYFF
Sbjct: 407 VYANE-SLLQLLQSSQSLYAHLYSLKHYFF 435
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 230 TLREAKKKLMH-LWNWLEKNSKISWM 304
TLREAKK+L H W L + +K+ ++
Sbjct: 186 TLREAKKRLKHRFWTELYQGAKLFYL 211
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 294 ILEFFSSQFHKCINFFFASLKVFYAECINSYLRYS 190
+LEF +S ++CI+ FA L V C++ + ++S
Sbjct: 564 VLEFLNSCINRCISRVFAYLDV----CVDCFKKHS 594
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 163 QKACQNLYDDQYSCRHYFFSRN 98
Q C L +D Y C+ +FF RN
Sbjct: 78 QTCCSTLTED-YECQEFFFWRN 98
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 69 HSIHNGWKQTLREKK 113
H++HN W Q RE K
Sbjct: 172 HNLHNAWSQLSREAK 186
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 181 LDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 306
L LG P T F ++F+R E +D ++ L ++ + L E
Sbjct: 392 LRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKE 433
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 94 RRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEE 252
R Y + K+ K K ETLK L+ +PEV + + + +++ E
Sbjct: 49 RHYQNVGNAYKAEALLKDAKKQCETLKSALNGKLPEVNIESHMLSKYRKYLNE 101
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 21 PTILYQSNKDRPSTPTHSIHNGWKQTLREK 110
P+ +++NKD +T H I K+ L+EK
Sbjct: 148 PSKTHKANKDEKATRLHLIIANLKKALKEK 177
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 278 EKNSKISWMKCKYKY*FIHTSSRVQWW 358
EKN K+ KY +IH S + WW
Sbjct: 203 EKNLKVVSTVAKYNSAYIHNSKKF-WW 228
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 21 PTILYQSNKDRPSTPTHSIH 80
P ++ + DRP TP H I+
Sbjct: 274 PVVVALTKSDRPGTPIHKIY 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,437
Number of Sequences: 5004
Number of extensions: 39817
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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