Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)              46   1e-05
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  31   0.76 
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)
          Length = 122

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +1

Query: 82  MDGNRRYAKKNSVDKSTGHHKGFDKLSETLK 174
           MDGNRR+AKK + ++S GH KGF+KL+E ++
Sbjct: 1   MDGNRRFAKKVNCERSKGHEKGFEKLTEKIR 31


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 151 DKLSETLKWCLDLGIPEVTVY-AFSIENFKRSKEEVDALMELAREKFQ 291
           D +S  ++WC +L +P+V ++    +   K  K  +  L+E+AR+ F+
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I TSS ++W
Sbjct: 120 VWRGIVTNSAIKWLRCFIVWRGIVTSSAIEW 150



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I TSS ++W
Sbjct: 12  VWREIVTNSAIEWLRCFIVWWGIVTSSAIEW 42



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I T+S ++W
Sbjct: 102 VWRGIVTNSAIEWLRCFIVWRGIVTNSAIKW 132



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  +S I W++C   +  I TSS ++W
Sbjct: 138 VWRGIVTSSAIEWLRCFIVWREIVTSSAIEW 168


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I TSS ++W
Sbjct: 75  VWRGIVTNSAIEWLRCFIVWRGIVTSSVIEW 105



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I T+S ++W
Sbjct: 57  VWRGIVTNSAIKWLRCFIVWRGIVTNSAIEW 87



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I T+S ++W
Sbjct: 39  VWRGIVTNSAIKWLRCFIVWRGIVTNSAIKW 69



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 263 LWNWLEKNSKISWMKCKYKY*FIHTSSRVQW 355
           +W  +  NS I W++C   +  I +SS ++W
Sbjct: 128 VWREIVTNSAIEWLRCFIVWRGIVSSSAIEW 158


>SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 306 FIQEILEFFSSQFHKCINFFFASLK 232
           F+ E+  F   Q H+C+N  F S K
Sbjct: 407 FLSELYVFLVDQMHQCVNKVFLSAK 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,493
Number of Sequences: 59808
Number of extensions: 264605
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)