Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92811-2|CAI46583.1|  299|Caenorhabditis elegans Hypothetical pr...   114   3e-26
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    32   0.22 
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    32   0.22 
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U28730-3|AAO38622.1|  243|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z92811-2|CAI46583.1|  299|Caenorhabditis elegans Hypothetical
           protein T01G1.4 protein.
          Length = 299

 Score =  114 bits (275), Expect = 3e-26
 Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
 Frame = +1

Query: 16  FFQLFCIKVIKTGRVPQHIAFIMDGNRRYAK-KNSVDKSTGHHKGFDKLSETLKWCLDLG 192
           ++Q    + I +G +P+H+AF+MDGNRR+AK K+  +   GH KGF +L++ L WC   G
Sbjct: 22  WWQWLLRRFIASGPIPRHVAFVMDGNRRFAKTKHLGNVIKGHEKGFTQLAKILDWCNRFG 81

Query: 193 IPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 306
           I E+TVYAFSIENFKRS+EEV  LM LA EKFQ LL++
Sbjct: 82  IREITVYAFSIENFKRSEEEVSGLMRLAEEKFQKLLND 119


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 136 HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREK 285
           +++ FD  +  ++W +D  I E   Y    ENF  + + ++  +   RE+
Sbjct: 287 NYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQ 336


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 136 HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREK 285
           +++ FD  +  ++W +D  I E   Y    ENF  + + ++  +   RE+
Sbjct: 308 NYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQ 357


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 439 DLITFQYNNGTYYPSLTS 386
           D  +FQYN   YYPSL++
Sbjct: 159 DTCSFQYNGNCYYPSLSA 176


>U28730-3|AAO38622.1|  243|Caenorhabditis elegans Hypothetical
           protein K10B2.3b protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 3   KLCIIFPTILYQSNKDRP--STPTHSIHNGWKQ 95
           K+C+ F ++L+Q  K R     P   + NGW Q
Sbjct: 167 KMCVYFASVLFQRKKFRNWLIKPYSPLVNGWSQ 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,293,102
Number of Sequences: 27780
Number of extensions: 218839
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)