Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.8  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 254 LMHLWNWLEKNS 289
           +M LW W+++NS
Sbjct: 278 VMSLWYWIDRNS 289


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 202 VTVYAFSIENFKRSKEEVDALMELAREKFQ 291
           + +Y  S+  F+R   E+D ++E  R K++
Sbjct: 23  IFLYFNSLVRFRRFTIELDKVLESPRGKYE 52


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 508 FFRTKKYLIYFKNXXLSVQTIRFDLITFQYNN 413
           F   +++L    N   ++  I  + ITFQY +
Sbjct: 402 FLERERFLGIINNIFKNMSQIEREAITFQYTD 433


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 508 FFRTKKYLIYFKNXXLSVQTIRFDLITFQYNN 413
           F   +++L    N   ++  I  + ITFQY +
Sbjct: 402 FLERERFLGIINNIFKNMSQIEREAITFQYTD 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,936
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)