Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase f...   107   6e-24
At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase f...    98   3e-21
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    94   6e-20
At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase / ...    77   1e-14
At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase, p...    74   5e-14
At5g58784.1 68418.m07364 dehydrodolichyl diphosphate synthase, p...    73   2e-13
At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase, p...    71   4e-13
At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase, p...    69   3e-12
At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase, p...    67   6e-12
At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family pr...    29   1.4  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    28   3.3  
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si...    28   4.4  
At3g18550.1 68416.m02359 TCP family transcription factor, putati...    28   4.4  
At3g48080.1 68416.m05242 lipase class 3 family protein / disease...    27   5.8  

>At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to dehydrodolichyl diphosphate
           synthetase (DEDOL-PP synthase) [GI:796076] and S.
           cerevisiae Rer2 [SP|P35196]
          Length = 295

 Score =  107 bits (256), Expect = 6e-24
 Identities = 50/102 (49%), Positives = 69/102 (67%)
 Frame = +1

Query: 1   ENCVSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWC 180
           E    F +    +VI  G +P HIAFIMDGNRRYAKK  +   +GH  GF  L   L++C
Sbjct: 20  EQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSMLQYC 79

Query: 181 LDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 306
            +LGI  VT+YAFSI+NF+R  EEV+++M+L  EK ++LL++
Sbjct: 80  YELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEK 121


>At5g60510.1 68418.m07588 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 272

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 43/100 (43%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
 Frame = +1

Query: 10  VSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDK-STGHHKGFDKLSETLKWCLD 186
           +S  + F  KV++ G +P +I+FIMDGNRR+AKK +++    GH  GF  +   L++C +
Sbjct: 19  MSLMRKFIFKVLRVGPIPTNISFIMDGNRRFAKKRNLEGLDAGHRAGFISVKYILQYCKE 78

Query: 187 LGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 306
           +G+P VT+YAF ++NFKR  EEV  +M+L  EK +  +D+
Sbjct: 79  IGVPYVTLYAFGMDNFKRGPEEVKCVMDLMLEKVELTIDQ 118


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +1

Query: 10  VSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKK-NSVDKSTGHHKGFDKLSETLKWCLD 186
           +S  + F  +V+  G +P +I+FIMDGNRR+AKK N +    GH  GF  +   L++C +
Sbjct: 18  MSLMRKFLFRVLCVGPIPTNISFIMDGNRRFAKKHNLIGLDAGHRAGFISVKYILQYCKE 77

Query: 187 LGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 306
           +G+P VT++AF ++NFKR  EEV  +M+L  EK +  +D+
Sbjct: 78  IGVPYVTLHAFGMDNFKRGPEEVKCVMDLMLEKVELAIDQ 117


>At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase /
           DEDOL-PP synthase (DPS) identical to dehydrodolichyl
           diphosphate synthase [Arabidopsis thaliana] GI:7960765
          Length = 303

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/72 (45%), Positives = 49/72 (68%)
 Frame = +1

Query: 58  VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 237
           +P+H+AFI+DGNRR+AK+  +  S GH  G  +L +  + C +LG+  V+ +AFS EN+ 
Sbjct: 70  MPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENWG 129

Query: 238 RSKEEVDALMEL 273
           R K E+D LM L
Sbjct: 130 RDKIEIDNLMSL 141


>At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076; this may be a pseudogene.
          Length = 253

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = +1

Query: 58  VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 237
           +P+H++FI+DGNRR+AK++ +  + GH  G  ++ E  + C +LGI  V+ +AFS EN+ 
Sbjct: 36  MPRHVSFILDGNRRWAKRDGLTTAQGHEAGTKRIIEIAEVCFELGIHTVSAFAFSTENWG 95

Query: 238 RSKEEVDALMEL 273
           R K EV  LM L
Sbjct: 96  RDKFEVKCLMSL 107


>At5g58784.1 68418.m07364 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 244

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
 Frame = +1

Query: 46  KTGR--VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAF 219
           K GR  +P+H+A I+DGNRR+A+K  +  S GH  G  +L E  K C  +G   ++++AF
Sbjct: 6   KRGRNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAF 65

Query: 220 SIENFKRSKEEVDALMEL 273
           S EN++R ++EV  LM L
Sbjct: 66  STENWERPEDEVKCLMAL 83


>At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 302

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 35/72 (48%), Positives = 46/72 (63%)
 Frame = +1

Query: 58  VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 237
           +P+H+A IMDGNRR+AK+  +  S GH  G  +L E  + C  LGI  V+ +AFS EN+ 
Sbjct: 70  MPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWG 129

Query: 238 RSKEEVDALMEL 273
           R K EV  LM L
Sbjct: 130 RHKIEVKCLMSL 141


>At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 289

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 35/79 (44%), Positives = 48/79 (60%)
 Frame = +1

Query: 37  KVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYA 216
           K ++   +P+H+A IMDGNRR+AK+  +  S G+  G  +L E    C  LGI  V+ +A
Sbjct: 50  KELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFA 109

Query: 217 FSIENFKRSKEEVDALMEL 273
           FS EN+ R K EV  LM L
Sbjct: 110 FSTENWGRHKIEVKCLMYL 128


>At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 310

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = +1

Query: 58  VPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFK 237
           +P+H+A IMDGN R+AK   +    GH  G + L E ++ C   GI  +TV+AFS +N+ 
Sbjct: 77  MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWI 136

Query: 238 RSKEEVDALMEL----AREKFQNL 297
           R + E+D L  L     + +FQNL
Sbjct: 137 RPRIEIDFLFSLFERSLKTEFQNL 160


>At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 184 DLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLD 303
           DLG P + ++  S ++F+  +  +  L+ELARE+    LD
Sbjct: 224 DLGFPRIMIHLASNQDFEVREFALRGLLELAREESVRNLD 263


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 142 KGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREK 285
           K F++L +   WC ++GI   + Y   IE  K +++++D + E  R+K
Sbjct: 281 KQFEELDQFYSWCKNMGIARSSEYP-EIE--KITQKKLDLMDEFIRDK 325


>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 549

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 196 PEVTVYAFSIENFKRSKEEVDALMELAREKFQNL 297
           PEV  +   + + K +KEE D++ +L   +++NL
Sbjct: 126 PEVWPFLLGVYDLKSNKEERDSIRQLKLTEYENL 159


>At3g18550.1 68416.m02359 TCP family transcription factor, putative
           similar to teosinte branched1 protein GI:13649866
           [Danthoniopsis dinteri]
          Length = 434

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 145 GFDKLSETLKWCLDLGIPEVTVYAFSIEN 231
           GFDK S+T++W L    PE+   A ++ +
Sbjct: 184 GFDKASKTVEWLLTQAKPEIIKIATTLSH 212


>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
           resistance protein-related similar to disease resistance
           protein/lipase homolog EDS1 GI:4454567; contains Pfam
           profile PF01764: Lipase
          Length = 629

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 103 AKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSI-ENFKRSKEEVDALMELAR 279
           A+K  V+         D++ E L W +++  P+   +     ++FK S EE D    + R
Sbjct: 371 AEKQRVENQKKIETKRDQIVERLTWIVEVYKPKCQAHKNGYYDSFKDSNEENDFKANVKR 430

Query: 280 EKFQNLLDEM 309
            +   + DE+
Sbjct: 431 VELAGIFDEV 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,461
Number of Sequences: 28952
Number of extensions: 195486
Number of successful extensions: 516
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)