Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   1.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.2  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    25   9.0  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 262 QKEQLANLXGHLNKEIAFHQEQIKRXEDAIRRHXEQMSDXEKP 390
           +KE+L N+   L+K++    E +    +AIR     +SD  +P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 295 LNKEIAFHQEQIKRXEDAIRRHXEQMS 375
           +N+E  F  E+ KR +D+ R+H   +S
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDIS 350


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 NWTSIVIVFEGLRIFLQNQEEYKIY 470
           ++ + V +FEG+++ L  +E+Y+ Y
Sbjct: 95  DFPTAVRIFEGIKVKLPTKEQYQAY 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,459
Number of Sequences: 5004
Number of extensions: 20580
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)