Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   2e-08
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            32   0.25 

>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 27/61 (44%), Positives = 38/61 (62%)
 Frame = +1

Query: 220 KMEAAXEDEYFYKKQKEQLANLXGHLNKEIAFHQEQIKRXEDAIRRHXEQMSDXEKPX*T 399
           KME A E++YF + Q +QLA L  H    IA H+++I+  E+AIRRH E +   EK   +
Sbjct: 82  KMEQAHEEQYFRQMQAQQLAALKEHQEHLIATHKQEIEHHEEAIRRHKEALKSYEKKDGS 141

Query: 400 G 402
           G
Sbjct: 142 G 142


>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 220 KMEAAXEDEYFYKKQKEQLANLXGHLNKEIAFHQEQIKRXEDAIR 354
           K   A E E   K+Q ++L  + G L  E+A   + IK+ ++AIR
Sbjct: 349 KRRLAAETEEALKEQDDRLGKILGKLQLEVARRDDIIKKQDEAIR 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,529
Number of Sequences: 59808
Number of extensions: 151245
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)