Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F03f
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 69 2e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 65 3e-11
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 60 7e-10
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 60 7e-10
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 59 2e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 57 7e-09
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 57 7e-09
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 45 3e-05
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.39
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_22731| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 27 6.3
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +1
Query: 229 LGSSIKSDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
L ++ + + DK ++ LDV+++ PEEIS+K G I ++GKH+ + +HGY + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSY 87
Query: 406 ALPEGCTAESVESRLSSDGVL 468
LP+G +V SR++ DG+L
Sbjct: 88 NLPDGVDVSTVSSRITGDGLL 108
Score = 25.4 bits (53), Expect(2) = 0.96
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 208 LAAAARDLGSSIKSDKDKFQVNLDVQHFAPE 300
+ A+ G K D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 23.4 bits (48), Expect(2) = 0.96
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 397 RRYALPEGCTAESVESRLSSDGVL 468
R + LP+ +S+ SRL DG L
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKL 184
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 64.9 bits (151), Expect = 3e-11
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +1
Query: 250 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCT 426
D DKFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVD 60
Query: 427 AESVESRLSSDGVL 468
S+ +R++ DG+L
Sbjct: 61 ESSISTRIAEDGML 74
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 250 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCT 426
D KF + LDV F PEE+ VK + V + E ++HG+ + RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVD 153
Query: 427 AESVESRLSSDGVL 468
+++ RL DGVL
Sbjct: 154 MDTLVPRLGKDGVL 167
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 60.5 bits (140), Expect = 7e-10
Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 424 TAESVESRLSSDGVL 468
A +V++R+S+ G L
Sbjct: 61 EASNVKTRISNHGQL 75
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 226 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 406 ALPEGCTAESVESRLSSDGVLSXIAPGR 489
LP +S+ +RL +G L A R
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 60.5 bits (140), Expect = 7e-10
Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 424 TAESVESRLSSDGVL 468
A +V++R+S+ G L
Sbjct: 61 EASNVKTRISNHGQL 75
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 226 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 406 ALPEGCTAESVESRLSSDGVLSXIAPGR 489
LP +S+ +RL +G L A R
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 424 TAESVESRLSSDGVL 468
A +V++R+S+ G L
Sbjct: 61 EASNVKTRISNHGQL 75
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAE 432
D+ ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 433 SVESRLSSDGVL 468
+V++R+S+ G L
Sbjct: 298 NVKTRISNHGQL 309
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 226 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 406 ALPEGCTAESVESRLSSDGVLSXIAPGR 489
LP +S+ +RL +G L A R
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 226 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 379
Query: 406 ALPEGCTAESVESRLSSDGVLSXIAPGR 489
LP +S+ +RL +G L A R
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKR 407
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 424 TAESVESRLSSDGVL 468
A +V++R+S+ G L
Sbjct: 61 EASNVKTRISNHGQL 75
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 226 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 405
D G DKF + +DV F P+ I V+ ++V HE + + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 406 ALPEGCTAESVESRLSSDGVLSXIAPGR 489
LP +S+ +RL +G L A R
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 57.2 bits (132), Expect = 7e-09
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
++++K ++ LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPEG
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61
Query: 424 TAESVESRLSSDGVL 468
A +V++R+S+ G L
Sbjct: 62 EASNVKTRISNHGQL 76
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +1
Query: 232 GSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYAL 411
G+ +S DKF + +DV+ F PE I V+ ++V HE + + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 412 PEGCTAESVESRLSSDGVLSXIAPGR 489
P +S+ +RL +G L A R
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 57.2 bits (132), Expect = 7e-09
Identities = 27/65 (41%), Positives = 42/65 (64%)
Frame = +1
Query: 274 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 453
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPEG E+V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 454 SDGVL 468
+ G L
Sbjct: 71 NHGHL 75
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +1
Query: 244 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGC 423
K+ +DKF + +DV F PE I V+ ++V HE + + H Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREV 150
Query: 424 TAESVESRLSSDGVL 468
+S+ +RL +G L
Sbjct: 151 DMDSLTTRLDKEGKL 165
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 217 AARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQF 393
A ++ S+ D KF + LDV F PEE+ VK + V + E ++HG+ +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 70
Query: 394 TRRYALPE 417
R + LP+
Sbjct: 71 NRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.39
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 346 KHEEKKDQHGYISRQFTRRYAL 411
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 310 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 417
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_22731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 481 VRXQTTHHLKTAGTPQIQPYSP 416
VR +T HH K P I+PY P
Sbjct: 29 VRERTGHHKKCGALPSIKPYLP 50
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 243 DAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQ 127
D A V + S V+ FS H G+ CST + ++P+
Sbjct: 154 DVLAAVKTPVSPVSSNGTAFSEHGGSPCSTPTVSSAEPR 192
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 238 SIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEE-----KKDQHGYISRQFTRR 402
+I S +DK + + HFA E+ V+ YI E E +K Q +QF +
Sbjct: 1368 AIDSVRDKGEQLISCGHFAASEVEVRIEALYIQWEELLEASATKGRKLQEARDHQQFNQE 1427
Query: 403 YALPEGCTAESVESRLSSD 459
+ + C + LSSD
Sbjct: 1428 VDIADSCITDKETIVLSSD 1446
>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 189 LPPVASPCCRGSRPWLQHQK 248
L P SPCC+ + W+Q+ K
Sbjct: 296 LKPTMSPCCKTTTTWVQNLK 315
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 435 RFSRTALRQSVATSELTRYVTMLIFLLLVFAFNHDVAVRRFNRDF-FRGEML 283
RF+ + S + L Y +L+F ++F +N +FNR F F+ E++
Sbjct: 303 RFTCYNVLSSYFSVTLCIYYILLVFCAVIFVYNCAWTYTKFNRPFDFKKELM 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,184
Number of Sequences: 59808
Number of extensions: 346730
Number of successful extensions: 1015
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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