Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F02f
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   1.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   7.7  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 252 SWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTRIHVY 106
           SW+  K S+ ++       RTCT +  AP+     + YI     R+HVY
Sbjct: 674 SWIGQKYSNVSFEKIDVAERTCTISLNAPILPDDGYAYI-----RLHVY 717


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 264 PPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKH 145
           P  PS + T    S Y     +    TH+Y  P P +HK+
Sbjct: 298 PSIPSTIPT--IPSAYSASVSSQPPLTHSYVHPGPQSHKY 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,857
Number of Sequences: 5004
Number of extensions: 19541
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)