Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F02f
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    30   0.82 
07_01_0576 + 4280671-4280730,4280812-4280865,4280955-4281017,428...    29   1.9  
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    28   3.3  
08_01_0842 - 8252232-8253155                                           27   5.8  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   5.8  
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684...    27   5.8  
01_06_0594 - 30473915-30474533,30474667-30474962                       27   5.8  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   7.6  

>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 470 EVSEEKGXPARRRVQEAAEDPDRQAEGGRGPCRVRREDSQET 345
           E  EE+    R  VQEA E+ D + +G     +  +ED+ E+
Sbjct: 83  EEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDADES 124


>07_01_0576 +
           4280671-4280730,4280812-4280865,4280955-4281017,
           4281100-4281149,4281255-4281330,4281663-4281863,
           4282414-4282501,4282606-4282691,4282773-4282859,
           4283289-4283333,4283547-4283567
          Length = 276

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 177 MCVYMFCLCVFVVCMW 224
           +C+ +FC  +F+ CMW
Sbjct: 84  LCISVFCFIIFISCMW 99


>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 285 AWLMRWIPPSPSWLVTKLSHSTYRPQTHTN 196
           +WL  W PP    + T   HS +  Q  TN
Sbjct: 203 SWLFTWFPPLKYLMYTPSFHSLHHTQFRTN 232


>08_01_0842 - 8252232-8253155
          Length = 307

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 464 SEEKGXPARRRVQEAAEDP 408
           S  KG PAR+ V+ AA+DP
Sbjct: 268 STVKGCPARKHVERAADDP 286


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 470 EVSEEKGXPARRRVQEAAEDPDRQAEGGRGPCRVRRE 360
           E ++EKG PA  R  + A+   +  +GG G    RRE
Sbjct: 283 EETKEKGVPAVMRCFDTAKIYAKAGDGGNGVVAFRRE 319


>04_04_1249 -
           32067644-32067787,32068245-32068346,32068415-32068438,
           32068439-32068543,32068625-32068729,32068885-32068966,
           32069254-32069456,32069534-32069692,32070045-32070154,
           32070264-32070405,32070544-32070690,32070773-32070847,
           32070923-32071132,32071223-32071426,32071514-32071633,
           32071743-32071852,32072033-32072177,32072266-32072499,
           32072611-32072646
          Length = 818

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -2

Query: 352 KKLQKEVDRLEDEL-GINKDRYKSLADEMDSTFAELAGY*ALA 227
           ++L KEVD L  EL  I +DR +S++ ++++  AELA Y  LA
Sbjct: 294 EQLMKEVDCLRIELHQIREDRDQSVS-QVNTLSAELANYKELA 335


>01_06_0594 - 30473915-30474533,30474667-30474962
          Length = 304

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 464 SEEKGXPARRRVQEAAEDPD 405
           S  KG PAR++V+ +  DPD
Sbjct: 105 SSSKGCPARKQVERSRNDPD 124


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -3

Query: 264 PPSPSWLVTKLSHSTYR-PQTHTNRTCTHTYAAPLPHTHKH 145
           PP    L   +S S+ R P     R      + P PHTH H
Sbjct: 20  PPRSVSLAASISFSSARKPPEPLRRAVADCLSPPAPHTHTH 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,055,573
Number of Sequences: 37544
Number of extensions: 126160
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)