Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F02f
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 38   0.004
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            38   0.004
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    31   0.64 
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.84 
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    29   1.9  
SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        27   5.9  
SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)                    27   5.9  
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)                 27   5.9  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 27   7.8  
SB_46949| Best HMM Match : DUF77 (HMM E-Value=5.5)                     27   7.8  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 309 ASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYIN- 133
           A+TR  T+A    +  P     V    H+  R +T   R CT+T+     H H H Y N 
Sbjct: 244 ANTRTRTKARKCTYTQPGTQMHVHAPGHANARTRTQA-RKCTYTHPGTQMHVHAHKYANA 302

Query: 132 --YTTTRIHVYT 103
             +T TR   YT
Sbjct: 303 HTHTQTRKCTYT 314



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 183 HTYAAPLPHTHKHMYINYTTTRIHVYT 103
           H YA     THK+MY  +  T++HV+T
Sbjct: 503 HAYARTRTQTHKYMY-THPDTQMHVHT 528


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 309 ASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYIN- 133
           A+TR  T+A    +  P     V    H+  R +T   R CT+T+     H H H Y N 
Sbjct: 19  ANTRTRTKARKCTYTQPGTQMHVHAPGHANARTRTQA-RKCTYTHPGTQMHVHAHKYANA 77

Query: 132 --YTTTRIHVYT 103
             +T TR   YT
Sbjct: 78  HTHTQTRKCTYT 89


>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 355 VKKLQKEVDRLEDELGINKDRYKSLADEMD 266
           VKK Q E+ +LEDEL   +++ K   DE+D
Sbjct: 355 VKKAQLELAKLEDELRRKRNQLKDAVDELD 384


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 219 YRPQTHTNRTCTHTYA--APLPHTHKHMYINYTTTRIHVYT*CNNIY*YFM*IYLRFS 52
           YRP  H  RT  H Y   A +  T+ H+Y  Y     HVY    ++Y  +  +Y  ++
Sbjct: 730 YRPYAHVYRTYAHVYRTYARVYRTYAHVYRTYA----HVYRPYAHVYRTYARVYRTYA 783


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 237 KLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTR 118
           K   + Y   THT+   THT+  P   TH H    + TTR
Sbjct: 391 KYDTTRYSTHTHTHLHDTHTHETPRHDTHLHDTHPHETTR 430


>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 222 TYRPQ-THTNRT-CTHTYAAPLPHTHKHMYINYTTTR 118
           TYR + +HT RT  +HTY     HT++ +Y++   TR
Sbjct: 294 TYRTRYSHTYRTRYSHTYRTRYSHTYRTIYLHTYRTR 330


>SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -3

Query: 240 TKLSHSTYRPQTHTNRTCTHTYA-APLPH---THKHMYINYT-TTRIHVYT*CNNIY 85
           T  +H TY   THT    THTY  A  P+   TH +    +T T   H YT   + Y
Sbjct: 35  TMATH-TYTMDTHTYTMATHTYTMATHPYTMATHPYTMATHTYTMATHPYTMATHPY 90


>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = -3

Query: 216 RPQTHTNRTCTHTYAAP-----LPHTHKHMYINYTTTRIH 112
           R +T T  T  H Y         P T +H Y  Y TT++H
Sbjct: 99  RQETITPETSRHNYTPKRHDTITPQTSRHNYTRYVTTQLH 138


>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 246 LVTKLSHSTYRPQTHT-NRTCTHTYAAPLPHTHKHMYINYTTTRIHVYT 103
           L T  +H+      HT    C HT  A   HT   MY N+T T ++ +T
Sbjct: 86  LTTMCNHTLTTMCNHTLTAMCDHTLTAMCDHTLTTMY-NHTLTTMYNHT 133


>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = -2

Query: 361  KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY*ALALHIQTTNTHKQNMYT 182
            K V  +   +++   + G ++DR +   DE+D+T   L  Y      +++ +T ++N YT
Sbjct: 989  KLVADISGTIEKTSSK-GESRDRLRLSLDELDATEERLCKYYTTFNAMESVSTIQRNYYT 1047


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -3

Query: 186 THTYAAPLPHTHKHMYIN-YTTTRIHVYT 103
           TH Y    PH + H Y + YT    H YT
Sbjct: 39  THQYTHQYPHQYTHQYTHQYTHQYTHQYT 67



 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 228 HSTYRPQTHTNRTCTHTYAAPLPHTHKHMYIN-YTTTRIHVYT 103
           H T++         TH Y    PH + H Y + YT    H YT
Sbjct: 9   HYTHQYTHQYPHQYTHQYTHQYPHQYPHQYTHQYTHQYPHQYT 51


>SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)
          Length = 355

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 361 KTVKKLQ----KEVDRLEDELGINKDRYKSLADEMDS 263
           KTVK+ Q    K V R  DE+   K R  SLAD+ DS
Sbjct: 38  KTVKEKQRCISKHVTRQLDEVQATKARRSSLADDWDS 74


>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
          Length = 388

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 346 LQKEVDRLEDELGINKDRYKSLADEMD 266
           LQ E+D L +EL    +R +SL DE++
Sbjct: 151 LQAELDNLNNELKAKDNRIESLQDELE 177


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 352  KKLQKEVDRLEDELGINKDRYKSLADE 272
            ++ Q+E DRLE+E  + ++R + L +E
Sbjct: 1222 RRFQEEQDRLEEERRLEEERLRQLEEE 1248


>SB_46949| Best HMM Match : DUF77 (HMM E-Value=5.5)
          Length = 160

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 325 LEDELGINKDRYKSLADEMDSTFAELAGY*ALALHIQTTNTHKQ 194
           L   + IN   Y+SL DE+     E+ G  A  +   TT  HK+
Sbjct: 101 LHYSMAINFTTYQSLIDELAEYLQEIKGKRARVVWKSTTMIHKE 144


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 261  PSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTRIH 112
            P PS   T++S +   P          T   PLP T    YI   T+  H
Sbjct: 1071 PHPSHFSTRVSTNGSSPSCQYTYADRSTQEKPLPPTRTSSYITAVTSAAH 1120


>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELA 245
           K +  L+ E+ +  DE+    DR K+   E D    ELA
Sbjct: 614 KEINTLRAELGKSRDEIARKNDREKNALRERDQLMKELA 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,701
Number of Sequences: 59808
Number of extensions: 157194
Number of successful extensions: 876
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)