Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F02f
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 62 1e-10
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 62 1e-10
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 58 3e-09
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 49 1e-06
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 49 1e-06
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 49 1e-06
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 34 0.059
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 34 0.059
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 34 0.059
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 34 0.059
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 34 0.059
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 34 0.059
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 31 0.42
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 31 0.42
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 31 0.42
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 31 0.42
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 27 5.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 5.1
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 27 5.1
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 27 9.0
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/41 (65%), Positives = 37/41 (90%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 239
++V+KLQKEVDRLEDEL K+RYK++++E+DSTF EL+GY
Sbjct: 244 RSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/41 (65%), Positives = 37/41 (90%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 239
++V+KLQKEVDRLEDEL K+RYK++++E+DSTF EL+GY
Sbjct: 244 RSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/41 (60%), Positives = 35/41 (85%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 239
++V+KLQKEVDRLEDEL K+RYK++++E+DS EL+GY
Sbjct: 244 RSVQKLQKEVDRLEDELVHEKERYKTISEELDSNLPELSGY 284
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAG 242
++V+KLQKEVDRLEDEL + K+R ++L +E++ T E+ G
Sbjct: 216 RSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEIQG 255
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAG 242
++V+KLQKEVDRLEDEL + K+R ++L +E++ T E+ G
Sbjct: 216 RSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEIQG 255
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAG 242
++V+KLQKEVDRLEDEL + K+R ++L +E++ T E+ G
Sbjct: 216 RSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEIQG 255
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 244 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 244 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 244 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 216 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 253
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 153 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 190
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 33.9 bits (74), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 248
++V+KLQKEVDRLE+ + + L DE+D EL
Sbjct: 216 RSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 253
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 327 GSKTSSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAP 166
G+ T++ +T + W I +P V+ LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 327 GSKTSSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAP 166
G+ T++ +T + W I +P V+ LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 327 GSKTSSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAP 166
G+ T++ +T + W I +P V+ LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 327 GSKTSSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAP 166
G+ T++ +T + W I +P V+ LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -3
Query: 333 STGSKTSSASTRIDTRAWLMRWIPPSPSWL-VTKLSHSTYRPQTHTNRTCTHTYAAPLPH 157
+T +T+SAST + T PS +T+ S ++ T R T TY P
Sbjct: 115 TTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTTTRIRTWTYTTRYPS 174
Query: 156 THKHMYINYTTTRIH 112
H Y RIH
Sbjct: 175 VHDPNRHRYGQDRIH 189
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 270 WIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTR 118
+I P+P+ + ST +PQ T Y AP T + YI TT R
Sbjct: 221 YIEPTPARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQR--YIEPTTQR 269
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -3
Query: 333 STGSKTSSASTRIDTRAWLMRWIPPSPSWL-VTKLSHSTYRPQTHTNRTCTHTYAAPLPH 157
+T +T+SAST + T PS +T+ S ++ T R T TY P
Sbjct: 115 TTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTTTRIRTWTYTTRYPS 174
Query: 156 THKHMYINYTTTRIH 112
H Y RIH
Sbjct: 175 VHDPNRHRYGQDRIH 189
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defective
protein 45 protein.
Length = 1076
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 464 SEEKGXPARRRVQEAAEDPDRQAEGGRGP 378
SEE+ PAR PDR A+G RGP
Sbjct: 1015 SEEQSAPARSGNSNVTSPPDR-AQGLRGP 1042
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,157,405
Number of Sequences: 27780
Number of extensions: 115945
Number of successful extensions: 472
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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