Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F02f
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 297 IDTRAWLMRWIPPSPSWL 244
           ID R W  R+ P S  W+
Sbjct: 71  IDKRPWWERYQPISYKWI 88


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  NLQNYCYKLNFIE 55
           N +  CY +N+IE
Sbjct: 98  NYKQLCYNINYIE 110


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  NLQNYCYKLNFIE 55
           N +  CY +N+IE
Sbjct: 98  NYKQLCYNINYIE 110


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  NLQNYCYKLNFIE 55
           N +  CY +N+IE
Sbjct: 98  NYKQLCYNINYIE 110


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  NLQNYCYKLNFIE 55
           N +  CY +N+IE
Sbjct: 98  NYKQLCYNINYIE 110


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 17  NLQNYCYKLNFIE 55
           N +  CY +N+IE
Sbjct: 98  NYKQLCYNINYIE 110


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 285 AWLMRWIPPSPSWLVTKLSHSTYRPQT 205
           AWL+  I   P  + TK++   Y P++
Sbjct: 165 AWLIALISAIPFAIYTKVNLVEYPPES 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,051
Number of Sequences: 438
Number of extensions: 1534
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)