Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F02f
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    29   2.1  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    27   6.4  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    27   8.5  

>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 361 KTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAEL----AGY*ALALHIQTTNTHKQ 194
           KTV  L KEV  +E ++ + ++  KSL  +++     L         L+  ++  NTH  
Sbjct: 564 KTVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKSLDEMNKNTSILSRELEKVNTHAS 623

Query: 193 NM 188
           N+
Sbjct: 624 NL 625


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 355 VKKLQKEVDRLEDELGINKDRYKSLADEMDS 263
           VKKL++EV+ +  ++   +  YKS AD + +
Sbjct: 740 VKKLEEEVEEMRSQIKEKEGLYKSCADTVST 770


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 355 VKKLQKEVDRLEDELGINKDRYKSLADEMDS 263
           +++ Q  +  L DELG  KDR+K    E+ S
Sbjct: 374 LEQAQNTIKELMDELGELKDRHKEKESELSS 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,567,157
Number of Sequences: 28952
Number of extensions: 101025
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)