Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    50   2e-07
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   3.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   6.8  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   6.8  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   6.8  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/110 (27%), Positives = 54/110 (49%)
 Frame = +3

Query: 6   ISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKLDETE 185
           ++  +H   + ++P+LSI   +  + RFIT ID LYD   +++++++   + +     +E
Sbjct: 346 LASRYHVFIVSDIPKLSIES-KDLIHRFITFIDALYDTHGKLILSSEVPVQEIYPTAPSE 404

Query: 186 FGDADRALMDDLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEY 335
              +        KI      A    F G EE+F   RCLSR+ EM+   +
Sbjct: 405 VLSSTADPAAKGKIESHYHGA----FGGIEEVFTFTRCLSRLSEMKKQSW 450


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 207 LMDDLKITKDSEDAKATIFTGEEE 278
           LM D+ ++KD ED   T+   E+E
Sbjct: 293 LMKDMHVSKDKEDVGLTVSDAEDE 316


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 3   VISKTFHTVFIRNLPQLSISK 65
           VISK+F T+ ++N  QLS+ K
Sbjct: 462 VISKSFGTLIVKNHNQLSLLK 482


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 379 EVNFG*FICVPHFSQYSSVCISIIRERHRSHANISSSPVNIVAL 248
           +VNF   I  P+ +   S+C+ I+R++      IS   ++I +L
Sbjct: 66  KVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSL 109


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 307 RERHRSHANISSSPVNIVALASSESLVIF 221
           RE H S    +SSP+ I  L S  S+++F
Sbjct: 59  RENHSSGTTDNSSPLLIKLLISFTSIILF 87


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 307 RERHRSHANISSSPVNIVALASSESLVIF 221
           RE H      +SSP+ I+ L S  S+++F
Sbjct: 59  RENHSYGTTDNSSPLLIILLISFTSIILF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,219
Number of Sequences: 5004
Number of extensions: 41008
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)