Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564...    68   5e-12
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931...    55   3e-08
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861     28   5.2  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   9.1  
06_01_0126 - 973706-973807,974540-974780,974926-975161                 27   9.1  

>03_06_0707 -
           35655084-35655215,35656088-35656229,35656358-35656485,
           35656852-35656944,35657183-35657252,35657324-35657445,
           35658143-35658265,35659453-35659710,35659995-35660074,
           35660244-35660389,35660773-35660906,35661001-35661137,
           35663013-35663135,35663521-35663590,35663925-35664050,
           35664166-35664393
          Length = 703

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
 Frame = +3

Query: 6   ISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMK----- 170
           I++ +HT+FI ++P +S+ K R + RRFITLID LY++  R+V  A S   +L +     
Sbjct: 548 IARNYHTIFISDIPAMSM-KIRDKARRFITLIDELYNHHCRLVCLAASSIDDLFQGTDEG 606

Query: 171 ----LDETEF-GDADRA-LMDDLKITKD-----SEDAKATIFTGEEEMFACDRCLSRIME 317
               L+  +F G+A+ A L  D+    +     S      I +G+EEMFA  R +SR++E
Sbjct: 607 PLFDLESFQFEGEAEGAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIE 666

Query: 318 MQTDEYWEK 344
           MQT  Y E+
Sbjct: 667 MQTSLYLER 675


>08_01_0996 +
           10089800-10090149,10090426-10090483,10092922-10093126,
           10093201-10093280,10093377-10093477,10093566-10093691,
           10094099-10094101,10094736-10094763,10094875-10094961,
           10095187-10095273,10095346-10095411,10095511-10095603,
           10095688-10095744,10095834-10095959,10096049-10096139,
           10096233-10096321,10096951-10097141,10097224-10097322,
           10098814-10098829
          Length = 650

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 34/119 (28%), Positives = 64/119 (53%)
 Frame = +3

Query: 12  KTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKLDETEFG 191
           K FHT+ +  +P+   S++R+   RF+TL+D +Y+N+ R++  AD+ P  L + +     
Sbjct: 520 KKFHTLALDGIPKFG-SQNRTAAYRFVTLVDVMYENKARLLCTADAAPIELFE-NIVTVA 577

Query: 192 DADRALMDDLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEYWEKWGTHIN*P 368
           +A R +      ++ ++D    +    E  FA DR +SR+ E+ + EY E +   +  P
Sbjct: 578 EA-RKISPRSSRSQKTDDPDLCV--DNELGFAKDRTISRLTEINSREYLEDFEAKLRQP 633


>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
          Length = 443

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 141 ADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFT-GEEEMFACDR 296
           A S P N+ +  E  F + +    DD+ +T  +E+  +  FT  + +M A  R
Sbjct: 205 ATSLPPNIKEEQEKLFDELENTTCDDIMVTMPAENMVSEYFTISQRDMIALRR 257


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 382 YH*QCFSVTYLKINKNASTYLLKEYMIICKRQY 480
           YH  CF  T+ K     S Y   E ++ CK  Y
Sbjct: 33  YHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHY 65


>06_01_0126 - 973706-973807,974540-974780,974926-975161
          Length = 192

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 293 ITCKHFFFTRKYSSFGIFRVFSNFQVIHKCSVCITKFSFI 174
           +T K+ FFT++ ++ G       F  +HKC+V +   +++
Sbjct: 94  VTAKNRFFTQRRNAAGQL----GFSALHKCTVALKMLAYV 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,375
Number of Sequences: 37544
Number of extensions: 207018
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)