Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)           118   4e-27
SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)           56   2e-08
SB_10681| Best HMM Match : AFG1_ATPase (HMM E-Value=3.5e-09)           31   0.097
SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14)                   30   1.0  
SB_18073| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-16)                 29   3.1  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                28   4.1  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)
          Length = 392

 Score =  118 bits (283), Expect = 4e-27
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
 Frame = +3

Query: 6   ISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKLDETE 185
           + K F  +FIR++PQ+++ K +++ RRFITLIDTLYDNRVR+V +A++ P +L +     
Sbjct: 268 LCKHFDVIFIRDIPQMTLYK-KTEARRFITLIDTLYDNRVRLVCSAEASPSDLFQASPLS 326

Query: 186 FGDAD--RALMDDLKITKDSED-AKATIFTGEEEMFACDRCLSRIMEMQTDEYW 338
             D +  R LMDDL ++ DS D +KA+IFT EEE+FA +R +SRI EMQT++YW
Sbjct: 327 TKDLEFQRMLMDDLSLSSDSADNSKASIFTAEEEIFAFERTVSRITEMQTEQYW 380


>SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)
          Length = 424

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
 Frame = +3

Query: 72  SQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKL-DETEFGDADRALMD-------DLKI 227
           ++ RR ++ ID +Y++RV++   A S P++L +L       D D+  ++       DL++
Sbjct: 204 NEARRLLSFIDAVYESRVKLYCTAASAPEDLFQLIPRNSQEDPDKMHLEMIGELAYDLQL 263

Query: 228 TKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEY 335
           +K  + A   I TGEEE+F+  RC+SR+ EMQ++ Y
Sbjct: 264 SK-LDLASLGILTGEEEIFSFKRCISRLNEMQSEIY 298


>SB_10681| Best HMM Match : AFG1_ATPase (HMM E-Value=3.5e-09)
          Length = 333

 Score = 30.7 bits (66), Expect(2) = 0.097
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 36  RNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAA 143
           R LP LS+      +RRFI L+D  YD +V + + A
Sbjct: 163 RQLPALSVKD--DSVRRFIALVDECYDRKVPLYLEA 196



 Score = 21.8 bits (44), Expect(2) = 0.097
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 252 ATIFTGEEEMFACDRCLSRIMEMQTDEY 335
           A ++T     FA  R LSR+ EMQ   +
Sbjct: 201 AELYTEGFLSFAFRRSLSRLQEMQLQRF 228


>SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14)
          Length = 808

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 281 HF-FFTRKYSSFGIFRVFSNFQVIHKCSV 198
           HF +F   +   G FRV  +F+V++KCS+
Sbjct: 778 HFGYFLGSFRVLGSFRVLGSFRVLYKCSI 806


>SB_18073| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-16)
          Length = 339

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -1

Query: 332 FVGLHFHYT*KTSITCKHFFFTRKYSSFGIFRVFSNFQV----IHKCSVCITKFSFI*FH 165
           ++ LH+H      +T K   +    S + +F   S  Q+    +++ SVCI    F+   
Sbjct: 138 YLALHWHLRYAGIVTTKRIIYIL-VSFWFVFAAMSTVQIWSMTLYRISVCIVLAIFLIGT 196

Query: 164 EIFWFAISSNYNPHSVIIQS 105
              +F I      HSV IQS
Sbjct: 197 SFTYFRIYRVLRRHSVQIQS 216


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
 Frame = -1

Query: 479 YWRLQIIIYSFSR*VLAFLFIFK----YVTEKHC**Y*SKFWLVYMCSPFLPIFVGLHFH 312
           YW       SF + V A + IF     +VT  H     + FW + MC+ ++  +  + +H
Sbjct: 393 YWYDNAFSVSFEQKVPAAVEIFLKAVWFVTNVHVLYAFASFWCIAMCNMYITGYSMIDYH 452

Query: 311 YT*KTSITCKH--FFFTRKYSSFGIFRVFSNFQVIHKCSVCITKFSFI*FHEIFWFAISS 138
            T  T +  K     F +   SF     F    +    S C    +F+  + +   A+++
Sbjct: 453 DTMSTHLKNKETPITFRQAVHSFAERGTF----LKKSASACRVSLAFLVIYSVASLAVNA 508

Query: 137 NY 132
            Y
Sbjct: 509 FY 510


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 331 SSVCISIIRERHRSHANISSSPVNIV 254
           SS  I II + H  H +ISSSP+NI+
Sbjct: 347 SSTNIIIIHQYHH-HPSISSSPINII 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,920
Number of Sequences: 59808
Number of extensions: 271730
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)