Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...    96   2e-20
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin p...    27   8.1  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   8.1  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    27   8.1  

>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
 Frame = +3

Query: 3   VISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKLD-- 176
           V ++ FHTV +RN+P ++     + +RRFIT+IDT YD +VRVVI A +    L + +  
Sbjct: 317 VYARVFHTVIVRNIPIMNQDMWNA-MRRFITMIDTFYDQKVRVVIGAAAPLDELFQFEGH 375

Query: 177 ---ETEFGDADRALMDDLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEY 335
                   D+ R LMDDL I  D E   A +F+G+EE FA  R +SR+ EMQT++Y
Sbjct: 376 NTSHDALSDSKRMLMDDLGIKSDHEGMSANVFSGDEEAFAYSRTVSRLYEMQTEKY 431


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 362 VYMCSPFLPIFVGLHFHYT*KTSITCKHFFFTRKYSSFGIFRVFS 228
           +  C  FLP+F     H   K   TC H +F  +Y+S  I R+FS
Sbjct: 100 IVTCFVFLPVF-----H---KMKSTCLHEYFIHRYNSILIRRLFS 136


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 TLYDNRVRVVIAADSEPKNLMKLDETEFGDAD 200
           TL D R + +   DS+  NL+K  ETEF   D
Sbjct: 426 TLLDPRYKDLYTNDSDTSNLIKAIETEFETMD 457


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 302  FTYNGNANRRILGEMGNTYKLTKIYFNIISNVFRLH 409
            F YN N+    L   GN Y++  +  NIIS+ F L+
Sbjct: 2469 FAYNSNSTALALS--GNNYQVITLLNNIISHNFALY 2502


>U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin
           protein 1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 269 TRKYSSFGIFRVFSNFQVI 213
           T   SSFG+ ++F NFQV+
Sbjct: 223 TAALSSFGVKKIFKNFQVV 241


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +3

Query: 168 KLDETEFGDADRALMDDLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEYWEKW 347
           K++E ++   D +++DD +  K +++A   I   EEE     + LS ++ +   ++ E+ 
Sbjct: 292 KVNEYKYLRNDDSMIDDAETAKMTDEAFTRIGLSEEEKIWIFQILSAVLWIGDIKFGERS 351

Query: 348 GTHIN 362
           G  ++
Sbjct: 352 GLDVS 356


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 69  RSQLRRFITLIDTLYDNRVRVVIAADSEPKNLMKLDETEFGDADRAL 209
           R Q   +  L + LYD+ + V    D   +++ +LDE  F + D+ L
Sbjct: 16  RKQYIDYERLKNLLYDDMMEVPADDDRREEHISRLDEKFFNECDQEL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,620
Number of Sequences: 27780
Number of extensions: 223161
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)