Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 158 4e-40
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 140 2e-34
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 110 1e-25
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 31 0.10
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 3.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 5.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 6.8
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 158 bits (384), Expect = 4e-40
Identities = 74/162 (45%), Positives = 108/162 (66%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KD+FEA+YK D+AKRLL+ KSAS E +L LK+ CG FT LEGMF+D+ +SK+
Sbjct: 420 KDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFT 479
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKH 363
+++ H A+ +L V++L+ +WP+Y +RLP ++ + + F KFYL+K
Sbjct: 480 SSFR-HSKAAHNLHR----DLYVNVLSQAYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQ 534
Query: 364 SGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFND 489
G+K+ W +LGHC+++A F GNKEL +SLFQA VLL FN+
Sbjct: 535 VGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNN 576
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 140 bits (338), Expect = 2e-34
Identities = 78/165 (47%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KDVFE +YK LAKRLL +S S DAE M+S+LKQE G FT KLEGMF DM LS+++
Sbjct: 462 KDVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELL 521
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWP---TYRACEVRLPTELTRQQEHFTKFYL 354
YK H SA +++ P ++L+V IL FWP + + P L Q + FT FYL
Sbjct: 522 QEYK-HNSA-LQSAKP-ALDLNVSILASTFWPIDLSPHKIKCNFPKVLLAQIDQFTDFYL 578
Query: 355 AKHSGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFND 489
+KH+GRKL W P++G +R NF +L VS +++LLLF D
Sbjct: 579 SKHTGRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQD 623
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 110 bits (264), Expect = 1e-25
Identities = 71/169 (42%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KDVF+ FY K LAKRL+ G S S DAE SMLSKLK+ CG +T KL+ MF+D+ LS++I
Sbjct: 454 KDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEIT 513
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWP-TYRACEVRLPTELTRQQEHFTKFYLAK 360
+ Q S G ++ S +L FWP + LP EL E F +Y +
Sbjct: 514 EAFWQ-----LPQSRAGNIDFSALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSC 568
Query: 361 HSGRKLHWQPTLGHCVLRANF-AQGNKE--LQVSLFQALVLLLFNDGDN 498
H+GRKL W L ++A Q N QVS +Q VLLL+N D+
Sbjct: 569 HNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDS 617
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 172 KDINITYKQHLSA---STETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFT 342
KDIN+ Y+ +LSA S T+ + + +G A + LPTEL + Q ++
Sbjct: 92 KDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPTELFQSQNDYS 151
Query: 343 KF 348
+F
Sbjct: 152 RF 153
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 277 PTYRACEVRLPTELTRQQEHFTKF 348
P Y+AC + L L Q F+KF
Sbjct: 639 PAYQACSINLTKILLLQSHEFSKF 662
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 446 CSSLLPCAKLALSTQCPSVGCQCSFRP 366
C LLPC + +C S C F P
Sbjct: 342 CDELLPCGEHTCKKRCHSGLCGACFEP 368
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +1
Query: 106 KQECGGGFTCKLEGMFKDMELSKD----INITYKQHLSASTETSGPGGV 240
K CG GFTC ++G ++ N+T++ A T GV
Sbjct: 66 KDSCGVGFTCHIKGQVSHKIVTDARLLLCNMTHRGATGADTRDGDGAGV 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,616
Number of Sequences: 5004
Number of extensions: 34259
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -