Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6903| Best HMM Match : Cullin (HMM E-Value=0) 120 3e-49
SB_16545| Best HMM Match : Cullin (HMM E-Value=0) 99 2e-21
SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_19637| Best HMM Match : Cullin (HMM E-Value=0) 48 6e-06
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05) 31 0.58
SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0) 31 0.58
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 27 7.1
SB_40260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_6903| Best HMM Match : Cullin (HMM E-Value=0)
Length = 430
Score = 120 bits (289), Expect(2) = 3e-49
Identities = 56/66 (84%), Positives = 61/66 (92%)
Frame = +1
Query: 1 GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDI 180
GKDV+EAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECG FT KLEGMFKDMELSKD+
Sbjct: 113 GKDVYEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGAAFTSKLEGMFKDMELSKDV 172
Query: 181 NITYKQ 198
+ ++Q
Sbjct: 173 MVQFRQ 178
Score = 92.7 bits (220), Expect(2) = 3e-49
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 6/71 (8%)
Frame = +1
Query: 313 ELTRQQEHFTKFYLAKHSGRKLHWQPTLGHCVLRANFAQGN------KELQVSLFQALVL 474
++ QE F KFYLAKHSGRKL WQ TLGHCV++A+F++G+ KELQVSLFQ LVL
Sbjct: 178 QMVHYQETFKKFYLAKHSGRKLQWQNTLGHCVVKADFSEGSAGVQVKKELQVSLFQTLVL 237
Query: 475 LLFNDGDNLSL 507
L+FN+G+ SL
Sbjct: 238 LMFNEGNEYSL 248
>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
Length = 471
Score = 99.1 bits (236), Expect = 2e-21
Identities = 60/162 (37%), Positives = 88/162 (54%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KD+F+ FY K LAKRL+ S S+DAE++M+S+LK CG +T +L MF DM +S D+N
Sbjct: 258 KDIFQKFYSKMLAKRLIHNLSISMDAEEAMISRLKHACGYEYTNRLHRMFTDMSISSDLN 317
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKH 363
++ L+ + G+ S+ +L EL R + F +FY K
Sbjct: 318 SSFSDFLATAQVNM---GINFSLLVL----------------QELIRPVQMFEQFYNGKF 358
Query: 364 SGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFND 489
+GRKL W L + ++ N+ + L VS FQ V+LLFND
Sbjct: 359 NGRKLAWLQHLSNGEVKLNYCKRTYFLTVSTFQMAVMLLFND 400
>SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 52.8 bits (121), Expect = 2e-07
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +1
Query: 19 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQ 198
A Y L ++ K + D +S L + + KL MF+D+++S+D+N +K+
Sbjct: 192 ANYCDMLLRKTTYSKKLTSDEIESKLKDVDVGMPADYINKLARMFQDIKVSEDLNQEFKR 251
Query: 199 HLSASTETSGPGGVELSVHILTMGFWPTYRACE---VRLPTELTRQQEHFTKFYLAKHSG 369
+ G +++ IL G W RA E V LPTEL +FY HSG
Sbjct: 252 ----TCRDKGDIADSINIKILNAGAWS--RASERIPVSLPTELEDCIPEVEEFYRKNHSG 305
Query: 370 RKLHWQPTLGHCV 408
RKL W + + V
Sbjct: 306 RKLQWHHLMSNGV 318
>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
Length = 685
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +1
Query: 106 KQECGGGFTCKLEGMFKDMELSKDINITYKQHLSASTE 219
K ECG FT KLEGMFKDM +S N ++QHLS S +
Sbjct: 534 KTECGCQFTSKLEGMFKDMTVSHTTNEEFRQHLSNSQD 571
>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 467 RAWNNETCSS-LLPCAKLALSTQCPSV 390
+AWN+ CSS + PCA + L CP++
Sbjct: 370 KAWNHILCSSCIFPCASIFLRFLCPAI 396
>SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05)
Length = 421
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 349 YLAKHSGRKLHWQPTLGHCVLRAN-FAQGNKELQVSLFQALVLLLFNDGDNLSL 507
+LA++SGR H+Q H +RA F N+ Q L + LF G+++SL
Sbjct: 313 WLAQNSGRLKHYQNITRHREMRARPFESTNEYNQDIALTVLCVFLFCQGEDVSL 366
>SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 596
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 380 TGNPRSDTACSELTSHRVTKSYRFRYS 460
TG R D A S LT HR+ ++++F Y+
Sbjct: 324 TGEDRKDDASSILTYHRIVEAFKFAYA 350
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 461 WNNETCSSLLPC---AKLALSTQCPSVGCQCSFRPECFAR*NLVKCSCCRVSSVG 306
+NN T LPC K ALS +C G QC RP R +C+ C+ G
Sbjct: 632 FNNRT----LPCECDTKGALSDECQEFGGQCQCRPYVIGR----QCNRCKTGYYG 678
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 67 QIYLLAISLLDPFYRKLQKH 8
QI LA LLDPFYR ++ H
Sbjct: 463 QIVALAELLLDPFYRTIEVH 482
>SB_40260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 393 RGLPVQFPTRVLREVELGEVFLLPRQLGGQAHLAGAVRRPEAHRQDVNGQL 241
RG+ + ++RE + LP + G L AV+ P+A D++ ++
Sbjct: 17 RGMGLMLAVPMIREQNGNHTYGLPNRYGSTRLLRKAVKNPKAPSTDISERI 67
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 82 EKSMLSKLKQECGGGFTCKLEGMF-KDMELSK 174
E+ L+KLK+ C G F L+ M+ KD+ + K
Sbjct: 640 ERGRLTKLKRRCHGHFLVVLKSMYSKDLAVVK 671
>SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 428 CAKLALSTQCPSVGCQCSFRPECFAR*NLVK-CSCCRVSSVG 306
C K + P +G C+ P C + N K C C+V G
Sbjct: 10 CGKCVCNASLPYIGVYCNDCPTCSGQCNANKACVQCKVFGTG 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,079
Number of Sequences: 59808
Number of extensions: 287762
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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