Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 237 4e-63
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 152 1e-37
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 152 2e-37
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 149 8e-37
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 124 5e-29
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu... 49 2e-06
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 29 1.4
At1g05520.1 68414.m00565 transport protein, putative similar to ... 29 2.5
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb... 28 4.4
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com... 27 5.8
At1g23870.1 68414.m03011 glycosyl transferase family 20 protein ... 27 5.8
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 237 bits (579), Expect = 4e-63
Identities = 112/168 (66%), Positives = 138/168 (82%)
Frame = +1
Query: 1 GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDI 180
GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG FT KLEGMFKD+ELSK+I
Sbjct: 477 GKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEI 536
Query: 181 NITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAK 360
N ++KQ S+ T P G+E+SVH+LT G+WPTY +V+LP EL Q+ F +FYL+K
Sbjct: 537 NESFKQ--SSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSK 594
Query: 361 HSGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFNDGDNLS 504
+SGR+L WQ +LGHCVL+A+F++G KEL VSLFQA+VL+LFND LS
Sbjct: 595 YSGRRLMWQNSLGHCVLKADFSKGKKELAVSLFQAVVLMLFNDAMKLS 642
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 152 bits (369), Expect = 1e-37
Identities = 77/167 (46%), Positives = 111/167 (66%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KD+F FY+K LA+RLL +SA+ D E+S+L+KLKQ+CGG FT K+EGM D+ L+++
Sbjct: 426 KDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ 485
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKH 363
+++ +L S + PG ++L+V +LT GFWP+Y++ ++ LP+E+ + E F FY K
Sbjct: 486 NSFEDYLG-SNPAANPG-IDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKT 543
Query: 364 SGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFNDGDNLS 504
RKL W +LG C + F Q EL VS +QA VLLLFN D LS
Sbjct: 544 KHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLS 590
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 152 bits (368), Expect = 2e-37
Identities = 83/170 (48%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KDVFE +YK+ LAKRLL GK+ S DAE+S++ KLK ECG FT KLEGMF DM+ S+D
Sbjct: 416 KDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSED-- 473
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKH 363
T + + E S G L V +LT G WPT A LP E++ E F +YL H
Sbjct: 474 -TMRGFYGSHPELS--EGPTLIVQVLTTGSWPTQPAVPCNLPAEVSVLCEKFRSYYLGTH 530
Query: 364 SGRKLHWQPTLGHCVLRANFAQGNK-ELQVSLFQALVLLLFNDGDNLSLR 510
+GR+L WQ +G ++A F +G K EL VS FQ VL+LFN+ D LS +
Sbjct: 531 TGRRLSWQTNMGTADIKAIFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 149 bits (362), Expect = 8e-37
Identities = 82/171 (47%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KDVFE +YK+ LAKRLL GK+ S DAE++++ KLK ECG FT KLEGMF DM+ S D
Sbjct: 416 KDVFEKYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGYQFTSKLEGMFTDMKTSHDTL 475
Query: 184 I-TYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAK 360
+ Y H S GP L V +LT G WPT + LP E++ E F +YL
Sbjct: 476 LGFYNSHPELS---EGP---TLVVQVLTTGSWPTQPTIQCNLPAEVSVLCEKFRSYYLGT 529
Query: 361 HSGRKLHWQPTLGHCVLRANFAQGNK-ELQVSLFQALVLLLFNDGDNLSLR 510
H+GR+L WQ +G ++A F +G K EL VS FQ VL+LFN+ D LS +
Sbjct: 530 HTGRRLSWQTNMGTADIKAVFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 124 bits (298), Expect = 5e-29
Identities = 63/167 (37%), Positives = 99/167 (59%)
Frame = +1
Query: 4 KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDIN 183
KD+F F++K A+RLL ++ + E+S+L+K K+ G FT K+EGM DM L+K+
Sbjct: 430 KDLFAEFFRKKQARRLLFDRNGNDYHERSLLTKFKELLGAQFTSKMEGMLTDMTLAKEHQ 489
Query: 184 ITYKQHLSASTETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKH 363
+ + LS + G++ +V +LT GFWP+Y+ ++ LP E+ E F +Y K
Sbjct: 490 TNFVEFLSVNKTKKL--GMDFTVTVLTTGFWPSYKTTDLNLPIEMVNCVEAFKAYYGTKT 547
Query: 364 SGRKLHWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFNDGDNLS 504
+ R+L W +LG C L F + E+ V+ +QA VLLLFN+ + LS
Sbjct: 548 NSRRLSWIYSLGTCQLAGKFDKKTIEIVVTTYQAAVLLLFNNTERLS 594
>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiquitin
ligase; contains similarity to anaphase-promoting complex
subunit 2 GI:6180009 from [Homo sapiens]
Length = 865
Score = 48.8 bits (111), Expect = 2e-06
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Frame = +1
Query: 25 YKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQHL 204
Y+ LA++LL +D E + LK G + E M D+ SK +N K+
Sbjct: 557 YRVMLAEKLLNKTDYDIDTEIRTVELLKIHFGEASMQRCEIMLNDLIDSKRVNTNIKKAS 616
Query: 205 SASTET-SGPGGVE-LSVHILTMGFWPTYRACEVRLPTELTRQQEHFTKFYLAKHSGRKL 378
E V+ L+ IL+ FWP + + LP + + + Y + RKL
Sbjct: 617 QTGAELRENELSVDTLTSTILSTNFWPPIQDEPLELPGPVDKLLSDYANRYHEIKTPRKL 676
Query: 379 HWQPTLGHCVLRANFAQGNKELQVSLFQALVLLLFND 489
W+ LG L F + VS A +++ F +
Sbjct: 677 LWKKNLGTVKLELQFEDRAMQFTVSPTHAAIIMQFQE 713
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 419 LALSTQCPSVGCQCSFRPEC--FAR*NLVKCSCCRVSSVGRRTSQARYVGQKP 267
L L+ +CP C+CS P+ A NL + S V TS+ARY+ +P
Sbjct: 266 LRLNVKCPR--CRCSVFPDLDLSALSNLQSSGTEQHSQVNTETSEARYIRSQP 316
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 220 TSGPGGVELSVHILTMGFW 276
TS PG +LSVHI T+G W
Sbjct: 654 TSAPGDDQLSVHIRTLGDW 672
>At1g05520.1 68414.m00565 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 783
Score = 28.7 bits (61), Expect = 2.5
Identities = 27/99 (27%), Positives = 47/99 (47%)
Frame = +1
Query: 31 KDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQHLSA 210
KD+ + ++G AS+ +K S G G T + +K L K +T LS+
Sbjct: 431 KDIKIQGIIGPCASL--QKKGPSVADTVIGEGNTTQ----WKMCGLDKRTCLTVFFDLSS 484
Query: 211 STETSGPGGVELSVHILTMGFWPTYRACEVRLPTELTRQ 327
S ++S PGGV +++ M + + ++ T +TRQ
Sbjct: 485 SDQSSAPGGVNNQLYLQFMTSYQNSKGKTLQRVTTVTRQ 523
>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
(RbohD) / NADPH oxidase identical to respiratory burst
oxidase protein D from Arabidopsis thaliana [gi:3242789]
Length = 921
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 220 TSGPGGVELSVHILTMGFW 276
TS PG LSVHI T+G W
Sbjct: 665 TSAPGDDYLSVHIRTLGDW 683
>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 839
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 220 TSGPGGVELSVHILTMGFWPT 282
TS PG LSVHI +G W T
Sbjct: 606 TSAPGDDYLSVHIRALGDWTT 626
>At1g23870.1 68414.m03011 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 867
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 164 SYLKISILHISSTYQLVRRRAV 229
S+ K+SI HI STY+ +RRA+
Sbjct: 573 SFRKLSIDHIVSTYRNTQRRAI 594
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,478
Number of Sequences: 28952
Number of extensions: 192589
Number of successful extensions: 557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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