Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E11f
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   0.34 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   0.45 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   0.45 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.0  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.2  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   7.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.3  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  NRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTN-HENMKQRCNQN 182
           N+T L N+ SL    N+  KK  ++P     L     KK P N +EN +Q  N N
Sbjct: 100 NKT-LINETSLQLDENKLDKKDDDSPALRALLTRPQAKKTPPNQYENFQQYDNNN 153


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  NRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTN-HENMKQRCNQN 182
           N+T L N+ SL    N+  KK  ++P     L     KK P N +EN +Q  N N
Sbjct: 100 NKT-LINETSLQLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNN 153


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  NRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTN-HENMKQRCNQN 182
           N+T L N+ SL    N+  KK  ++P     L     KK P N +EN +Q  N N
Sbjct: 100 NKT-LINETSLQLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYENFQQYDNNN 153


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 309 DLENPKQRCNQN 344
           DLE  +Q+CNQN
Sbjct: 480 DLEKQRQQCNQN 491


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 3   QRCNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTNHENMKQRCNQN 182
           +R       E T++E  IP+   N  K + N          N+K LP  +   + R NQ+
Sbjct: 163 ERMKTTRALEKTSEELKIPKAKINTGKTQYN---------LNSKSLPRQYSQSRGRHNQS 213


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  QESLIPRCNQNYKKPRNNPENLIQLCNQNNKK 137
           QE+ + + NQNY K   N E  ++   ++ K+
Sbjct: 89  QENRV-KYNQNYSKVFGNDEKALEQIAKSEKE 119


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  QESLIPRCNQNYKKPRNNPENLIQLCNQNNKK 137
           QE+ + + NQNY K   N E  ++   ++ K+
Sbjct: 149 QENRV-KYNQNYSKVFGNDEKALEQIAKSEKE 179


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  QESLIPRCNQNYKKPRNNPENLIQLCNQNNKK 137
           QE+ + + NQNY K   N E  ++   ++ K+
Sbjct: 149 QENRV-KYNQNYSKVFGNDEKALEQIAKSEKE 179


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 458 LVVXVAKLYQILGV-VPWFLVVLIATWYQTLLV 363
           LV  ++K   I GV     LV+L A W  TLL+
Sbjct: 263 LVYGMSKSRNIEGVSFGTNLVILCALWITTLLL 295



 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 80  LVVLIATWYQTLLV 39
           LV+L A W  TLL+
Sbjct: 282 LVILCALWITTLLL 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,081
Number of Sequences: 336
Number of extensions: 1529
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)