Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E11f
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    27   1.8  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   4.2  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   4.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    24   9.7  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 95  PRESDTTLQPKQQETTDQPREYETTLQPEQQVTTD 199
           P++    L          P E++TT  PE+QVT D
Sbjct: 240 PKKHSPALSDGTTSNDGAPLEFDTTHLPEKQVTLD 274


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 24  RTELTNQESLIPRCNQNYKKPRNNPENLIQ 113
           R +LTN++S IP+  + + +  NN +  IQ
Sbjct: 292 REQLTNRKSGIPKLKKEHYERLNNEKRAIQ 321



 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 348 RTELTNQESLIPRCNQNYKKPRNNPENLIQ 437
           R +LTN++S IP+  + + +  NN +  IQ
Sbjct: 292 REQLTNRKSGIPKLKKEHYERLNNEKRAIQ 321


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 458 LVVXVAKLYQILGVVPWFLVVLIATWYQTLLVGQFCPVVLVATLFRIL 315
           L +   +L  +  V P  LV  I TW + L VG F P+ + A     L
Sbjct: 336 LTLVCRRLPVVFSVKP--LVPDIKTWKEALFVGHFGPIGVCAVYMAFL 381


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 137 TTDQPREYETTLQPEQQV 190
           TT Q   YET+ QP Q+V
Sbjct: 107 TTSQTIRYETSSQPSQEV 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,377
Number of Sequences: 5004
Number of extensions: 23405
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)