Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E11f
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0224 - 16577234-16577494,16577798-16577996,16578069-165781... 29 1.4
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 28 4.2
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 4.2
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 27 5.5
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911... 27 9.6
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941... 27 9.6
01_03_0274 - 14469601-14469951 27 9.6
01_01_1090 - 8576498-8576893 27 9.6
>02_03_0224 -
16577234-16577494,16577798-16577996,16578069-16578139,
16578442-16578517,16578632-16578762,16578853-16578978,
16579075-16579248,16579414-16579484,16579752-16579923,
16581780-16581892,16582705-16582779,16582913-16583009,
16583448-16583534,16583535-16583589,16583650-16583828
Length = 628
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -2
Query: 440 KLYQILGVVPWFLVVLIATWYQTLLVGQFCPVVLVATLFRILEI 309
K+Y +LG++PW +VV W+Q LV Q+C + AT + L+I
Sbjct: 127 KVY-LLGILPWLIVV----WWQA-LVSQYC--CMSATWLKKLDI 162
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 116 KLYQILGVVPWFLVVLIATWYQTLLVGQFC 27
K+Y +LG++PW +VV W+Q LV Q+C
Sbjct: 127 KVY-LLGILPWLIVV----WWQA-LVSQYC 150
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 9 CNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQ 125
C+ T TN +++ C K NNP+N LC++
Sbjct: 454 CSDKTGTLTTNHMTVVKACICGNIKEVNNPKNASDLCSE 492
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 333 CNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLC 443
C+ T TN +++ C K NNP+N LC
Sbjct: 454 CSDKTGTLTTNHMTVVKACICGNIKEVNNPKNASDLC 490
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 281 QPEQQVITERSRESETTLQPEQQDRTDQPRES 376
Q +QQ + ++ ++ + LQ +QQ + +QP+ S
Sbjct: 70 QQQQQKLQQQQQQQQQKLQQQQQQQQNQPQHS 101
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 276 RCNQNNK*LPSDLENPKQRCNQNNRTELTNQESLIPRCNQNYKKPRNNPE 425
RCN K ++ KQ + ELTN S + N N P NNP+
Sbjct: 316 RCNWATK--GANAGEEKQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQ 363
>07_03_0872 -
22190468-22190575,22190652-22190910,22191005-22191108,
22191245-22191423,22191565-22191670,22191797-22191940,
22192024-22192179,22192274-22192378,22192483-22192545,
22192993-22192995
Length = 408
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -2
Query: 410 WFLVVLIATWYQTLLVGQFCPVV 342
W+ +VLIAT+ + L+G++ P++
Sbjct: 287 WYALVLIATFNVSDLIGRYMPLI 309
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -2
Query: 86 WFLVVLIATWYQTLLVGQFCPVV 18
W+ +VLIAT+ + L+G++ P++
Sbjct: 287 WYALVLIATFNVSDLIGRYMPLI 309
>04_03_0853 -
20292734-20292968,20293056-20293144,20293239-20294111,
20294203-20294364
Length = 452
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 422 GVVPWFLVVLIATWYQT 372
G PW +V+L A WY T
Sbjct: 291 GATPWVVVLLHAPWYNT 307
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 98 GVVPWFLVVLIATWYQT 48
G PW +V+L A WY T
Sbjct: 291 GATPWVVVLLHAPWYNT 307
>01_03_0274 - 14469601-14469951
Length = 116
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 207 RGRSVVTCCSGCNVVSYSRGWSVVSCCFG 121
RG S C G YSRG S ++ C G
Sbjct: 88 RGASYYNCQPGAEANPYSRGCSAITQCRG 116
>01_01_1090 - 8576498-8576893
Length = 131
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 207 RGRSVVTCCSGCNVVSYSRGWSVVSCCFG 121
RG S C G YSRG S ++ C G
Sbjct: 103 RGASYYNCQPGAEANPYSRGCSAITQCRG 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,256,027
Number of Sequences: 37544
Number of extensions: 138431
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -