Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E11f
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35940.1 68417.m05113 expressed protein                             35   0.030
At3g56200.1 68416.m06246 amino acid transporter family protein l...    33   0.093
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152...    25   2.3  
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049...    25   2.3  
At5g34895.1 68418.m04113 hypothetical protein similar to At2g049...    25   2.4  
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049...    25   4.0  
At3g51140.1 68416.m05600 expressed protein                             27   4.6  
At2g31480.1 68415.m03845 expressed protein contains Pfam profile...    27   6.1  
At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1...    27   8.1  

>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 34.7 bits (76), Expect = 0.030
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 6   RCNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTNHENMKQRCNQNN 185
           R N NN   +  Q+ L  R N N +K     + L    N NN+KL    + +  R N NN
Sbjct: 169 RHNNNNEKRVEKQQPLDGRHNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPLNGRHNNNN 228

Query: 186 K 188
           +
Sbjct: 229 E 229



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 32/151 (21%), Positives = 54/151 (35%)
 Frame = +3

Query: 3   QRCNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLCNQNNKKLPTNHENMKQRCNQN 182
           Q  +QN+     N   ++P+  +  ++P +   N     N NN+K     + +  R N N
Sbjct: 120 QSTSQNSCDSTLNSNEMLPK-QKEVQQPLDGRHN-----NNNNEKRVEKQQPLDGRHNNN 173

Query: 183 NK*LPIDHDXXXXXXXXXXXXXXXXXXXXXXRCNQNNK*LPSDLENPKQRCNQNNRTELT 362
           N+                             R N NN+ L    +    R N NN   + 
Sbjct: 174 NEKRVEKQQPLDGRHNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPLNGRHNNNNEKRIE 233

Query: 363 NQESLIPRCNQNYKKPRNNPENLIQLCHXNN 455
            Q+ L  R   N K+ +   +  + + H NN
Sbjct: 234 KQQPLNGR--HNNKEKQKEKQQPLDVRHNNN 262


>At3g56200.1 68416.m06246 amino acid transporter family protein low
           similarity to N system amino acids transporter NAT-1
           [Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 435

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 455 VVXVAKLYQILGVVPWFLVVLIATWYQTLLVG 360
           ++ +   +++LG+VP FL++ I  W  T+ VG
Sbjct: 41  IMSMPAAFKVLGIVPAFLIITIIAWLSTISVG 72



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 110 YQILGVVPWFLVVLIATWYQTLLVG 36
           +++LG+VP FL++ I  W  T+ VG
Sbjct: 48  FKVLGIVPAFLIITIIAWLSTISVG 72


>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
           At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
           At3g47270, At2g02200
          Length = 808

 Score = 25.4 bits (53), Expect(2) = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 95  PRESDTTLQPKQQETTDQPREYETTLQPEQQVTTDR 202
           P E ++  QP+++ETT+ P+E       E   T D+
Sbjct: 603 PTEKES--QPQKEETTEVPKEENVEEHDEHDETEDQ 636



 Score = 21.4 bits (43), Expect(2) = 2.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 SETTLQPEQQDRTDQPRES 376
           +E   QP++++ T+ PRE+
Sbjct: 653 TEKESQPQKEETTEVPRET 671


>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
           At3g47270, At2g02200
          Length = 800

 Score = 25.4 bits (53), Expect(2) = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 95  PRESDTTLQPKQQETTDQPREYETTLQPEQQVTTDR 202
           P E ++  QP+++ETT+ P+E       E   T D+
Sbjct: 595 PTEKES--QPQKEETTEVPKEENVEEHDEHDETEDQ 628



 Score = 21.4 bits (43), Expect(2) = 2.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 SETTLQPEQQDRTDQPRES 376
           +E   QP++++ T+ PRE+
Sbjct: 645 TEKESQPQKEETTEVPRET 663


>At5g34895.1 68418.m04113 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
           At3g47270, At2g02200
          Length = 490

 Score = 25.4 bits (53), Expect(2) = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 95  PRESDTTLQPKQQETTDQPREYETTLQPEQQVTTDR 202
           P E ++  QP+++ETT+ P+E       E   T D+
Sbjct: 285 PTEKES--QPQKEETTEVPKEENVEEHDEHDETEDQ 318



 Score = 21.4 bits (43), Expect(2) = 2.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 SETTLQPEQQDRTDQPRES 376
           +E   QP++++ T+ PRE+
Sbjct: 335 TEKESQPQKEETTEVPRET 353


>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
           At5g34895, At2g02200
          Length = 671

 Score = 25.4 bits (53), Expect(2) = 4.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 95  PRESDTTLQPKQQETTDQPREYETTLQPEQQVTTDR 202
           P E ++  QP+++ETT+ P+E       E   T D+
Sbjct: 466 PTEKES--QPQKEETTEVPKEENVEEHDEHDETEDQ 499



 Score = 20.6 bits (41), Expect(2) = 4.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 SETTLQPEQQDRTDQPRES 376
           +E   QP++++ T+ PRE+
Sbjct: 516 TEKESQPQKEEITEVPRET 534


>At3g51140.1 68416.m05600 expressed protein
          Length = 278

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 163 FIFSWLVGSFLL 128
           FIFSWLVG+FL+
Sbjct: 233 FIFSWLVGTFLM 244


>At2g31480.1 68415.m03845 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 472

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 288 NNK*LPSDLENPKQRCNQNNRTELTNQESLIPRCNQNYKKPRNNPENLIQLCHXNNK 458
           N +   S+ EN  Q+ ++N +T L N       CN +  K R        L   NNK
Sbjct: 150 NQESTSSNKENHHQKSSKNTKTSLENVRKDGKVCNSSAGKARGTGSAKPSLPESNNK 206


>At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1;
           identical to GB:U80808
          Length = 1080

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 39  NQESLIPRCNQNYKKPRNNPENLIQLC 119
           N +S+IP   +NY   R+ PE    +C
Sbjct: 630 NTQSVIPHLTENYGASRDPPEKQAPMC 656



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 363 NQESLIPRCNQNYKKPRNNPENLIQLC 443
           N +S+IP   +NY   R+ PE    +C
Sbjct: 630 NTQSVIPHLTENYGASRDPPEKQAPMC 656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,720,022
Number of Sequences: 28952
Number of extensions: 124952
Number of successful extensions: 613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)