Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E10f
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 108 1e-24
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 96 6e-21
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 63 6e-11
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 0.83
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 1.5
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 1.5
03_02_0488 - 8824980-8825267,8825364-8827775 29 1.5
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 2.5
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 3.4
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 4.4
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 26 7.7
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 26 7.7
10_08_0058 + 14521922-14522779 26 7.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 26 7.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 108 bits (260), Expect = 1e-24
Identities = 57/119 (47%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 178
K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 10 KEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 355
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D
Sbjct: 70 RKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHD 124
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 96.3 bits (229), Expect = 6e-21
Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Frame = +2
Query: 50 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 223
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 224 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 355
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHD 137
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 63.3 bits (147), Expect = 6e-11
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +2
Query: 104 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 283
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 284 PSHKTRVANKQKRPRSRTLTSVYD 355
P +K + PR+RTL +V+D
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHD 109
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 318 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 202
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 56 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 190
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 56 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 190
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 181
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 182 KAFQKI 199
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 56 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 190
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 328 AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 176
AW L +S+++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 53 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 163
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 324 GLFCLLATRVLWLGLG 277
GL+ +LA R+LWL +G
Sbjct: 517 GLYTVLAPRILWLAIG 532
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 324 GLFCLLATRVLWLGLGRILRS 262
GL+ +LA R+LWL +G L S
Sbjct: 1017 GLYTVLAPRLLWLAIGICLLS 1037
>10_08_0058 + 14521922-14522779
Length = 285
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 63 NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRC 173
+S TPT+ P FT+ L +L S SS C C
Sbjct: 18 SSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSSCTC 54
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 26.2 bits (55), Expect = 7.7
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 2 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 181
++ S E +SF S+ + + + D L + Y KEI N+ ++ + + +L
Sbjct: 535 LEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDMEMANDRL 591
Query: 182 KAFQKIQIRL---VRELEKKFSGKHV 250
F +++ L V EL+K+ + V
Sbjct: 592 NDFNLVRLNLENTVCELKKEVTSLEV 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,129,334
Number of Sequences: 37544
Number of extensions: 168819
Number of successful extensions: 492
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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