Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E10f
(360 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 151 1e-37
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.28
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 1.5
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 1.5
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 2.0
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 2.0
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 2.6
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 3.5
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 3.5
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 27 4.6
SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20) 27 6.1
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5) 27 6.1
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 6.1
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 26 8.0
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 26 8.0
SB_18793| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 151 bits (367), Expect = 1e-37
Identities = 73/110 (66%), Positives = 91/110 (82%)
Frame = +2
Query: 2 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 181
+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP+P++
Sbjct: 12 VKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQI 71
Query: 182 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 331
+AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 72 RAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.28
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 74 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 238
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 239 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 331
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 1.5
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +2
Query: 68 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 235
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE- 1756
Query: 236 SGKHVVFVGDRKILP-KPSHKTRVANKQ 316
++ ++I P K S T VA +
Sbjct: 1757 -----LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 313 FVSNTSFVAGLRQDLTVSNKDYMFTTE 233
F+ N SFV+ + DLT S+ D+ + TE
Sbjct: 40 FIPNLSFVSAVLWDLTKSSSDFQWHTE 66
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 26 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 193
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 78 PTSKPNFGSFTLQKLKKLNYTIRS 149
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 283 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 143
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +3
Query: 57 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 155
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +2
Query: 164 VPMPKLKAFQKIQIRLVRELEKKFSG 241
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 3.5
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +2
Query: 17 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 181
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 182 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 295
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 283 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 143
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 40 LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86
>SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20)
Length = 637
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 276 RILRSPTKTTCLPLNFFSSSRTSLIW 199
R++ + TK LPLN+ S S+IW
Sbjct: 59 RLIATETKPHVLPLNYTSIPPASIIW 84
>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
Length = 311
Score = 26.6 bits (56), Expect = 6.1
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +2
Query: 74 NSDLKAQLREL-YITKAKEIELHNKKSIIIYVP--MPKLKAFQKIQIRLVRELEKKFSGK 244
N K +R + YI K E+ K+ +++ M +++ + +L+ + +
Sbjct: 51 NKAKKGVIRTVGYINKGNEVISTKKRKLLMKHSRDMLEVQVISTKKRKLLMKHSRDMLEV 110
Query: 245 HVVFVGDRKILPKPSH---KTRVANKQKR 322
V+F+ +RK+L K SH K +V +KR
Sbjct: 111 QVIFIKERKLLTKHSHDLVKVQVIFTKKR 139
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 283 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 143
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 40 LRQRLNSSNPSKSNPINILDALCQKHDIAYSKSKDLDDKHLADDNLL 86
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 164 VPMPKLKAFQKIQIRLVRELEKKFSG 241
VP+P+++A QK++ L R +E+K +G
Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 283 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 143
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 398 LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKGLDDKHVADDNLL 444
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 17 AEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKE-IELHNKKSIII 160
A+ +S + ++ + E + D KAQL EL + KAKE L KS +
Sbjct: 217 AQQESLKETLQEQEKETIQQLEEDFKAQLNELEVEKAKEQTALEEMKSFTV 267
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 26.2 bits (55), Expect = 8.0
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = +2
Query: 14 GAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQ 193
G+ +S E ++ T DL+ + + ITK ++ +LH +++ +P P
Sbjct: 187 GSHTNSGEVEAIPKAMQFTTIPDLQHYTQVINITKLRQADLHAREA--AGLPPPSTPTIS 244
Query: 194 KIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHK 295
++ E + H+ F G R +PK + K
Sbjct: 245 EMDSTKQEERQ-----THIAF-GSRVAIPKHARK 272
>SB_18793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 274 DLTVSNKDYMFTTELLFELTDKPDLD 197
D +S++D+ TE+L + +DK LD
Sbjct: 211 DFLISSEDWRLMTEMLLDQSDKDALD 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,381,070
Number of Sequences: 59808
Number of extensions: 189009
Number of successful extensions: 546
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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