Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E10f
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 114 2e-26
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 114 2e-26
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 108 9e-25
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 103 5e-23
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 103 5e-23
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 2.1
At5g40640.1 68418.m04933 expressed protein 27 3.8
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 3.8
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 5.0
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 26 6.6
At1g48880.1 68414.m05476 hypothetical protein 26 6.6
At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha... 26 6.6
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 26 8.7
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 26 8.7
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 26 8.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 114 bits (274), Expect = 2e-26
Identities = 59/120 (49%), Positives = 86/120 (71%), Gaps = 2/120 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 178
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 358
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 114 bits (274), Expect = 2e-26
Identities = 59/120 (49%), Positives = 86/120 (71%), Gaps = 2/120 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 178
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 358
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 108 bits (260), Expect = 9e-25
Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 178
K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 10 KDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 358
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEA 125
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 103 bits (246), Expect = 5e-23
Identities = 53/120 (44%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 178
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 358
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 103 bits (246), Expect = 5e-23
Identities = 53/120 (44%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Frame = +2
Query: 5 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 178
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 179 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 358
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 131 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 280
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 188 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 355
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 63 NSKPTPTSKPNFGSF 107
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 44 ISQALVELETNSDLKA-QLRELYITKAKEIE 133
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 63 NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSS 161
N KP PTS+ N+G F + K N +S++
Sbjct: 317 NQKPGPTSERNYGLFYPNEGKVYNVPFTKKSTT 349
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 212 VRELEKKFSGKHVVFVGD 265
VR++ K+ GK +VFVGD
Sbjct: 172 VRDVLKRLRGKRIVFVGD 189
>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325, GI:4468259 from (Pichia
angusta); contains Pfam profiles PF00982:
Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 730
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 291 WL-GLGRILRSPTKTTCLPLNFFSSSRTSLIW 199
W+ GL + + T T P +FF +S+TSL+W
Sbjct: 527 WVDGLKNVFKYFTDRT--PRSFFEASKTSLVW 556
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 25.8 bits (54), Expect = 8.7
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +2
Query: 2 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIYVPM 172
+KA SF+ I + +EL T+ DL+ E EI EL K + V
Sbjct: 557 VKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTSVAQ 616
Query: 173 PKLKAFQKIQIRLVRELEKKFSG 241
+ KA ++ L K +G
Sbjct: 617 GEKKAVHDAKVELAAAYSKLLAG 639
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 74 NSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK 196
N +Q++E ++ ++EL N+ ++ Y+P KA ++
Sbjct: 358 NMSEMSQVKENHMQSQLQVELENQSDVMRYIPNGHKKALRQ 398
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +3
Query: 75 TPTSKPNFGSFTLQKLKKLNY----TIRSRSSSMCRCL 176
+P P GSFT + NY +RS S+S C L
Sbjct: 7 SPVVTPALGSFTFSSRPRSNYIVMSAVRSNSASTCPIL 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,396,007
Number of Sequences: 28952
Number of extensions: 139771
Number of successful extensions: 458
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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