Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   1.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   2.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.2  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.0  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   9.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 442 INSVLESNIDLDEEFKENYELW-LEQEVYNNEINWDVLLST*SLIFLANRGKYMVW 278
           I++ LE   ++ E+F++NY++W   Q++ +   N++  L     +F  +   Y VW
Sbjct: 93  IDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVW 148


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 481 TEQEIDLTPLDTDINSVLESNIDLDEEFKENYELW 377
           +E+ +   PL+   N+ L + IDL +  +E Y+LW
Sbjct: 2   SEEVVQDAPLE---NNELNAEIDLQKTIQEEYKLW 33


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 451 DTDINSVLESNI-DLDEEFKENYELWLEQEVYNNEINWDVLL 329
           D + N++LE +  D DEE +E      E+ + N + NW  ++
Sbjct: 353 DNNTNTILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIV 394


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 451 DTDINSVLESNI-DLDEEFKENYELWLEQEVYNNEINWDVLL 329
           D + N++LE +  D DEE +E      E+ + N + NW  ++
Sbjct: 353 DNNTNTILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIV 394


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 490 GTGTEQEIDLTPLDTDINSVLESNIDLDEEFKENYELWLEQEVY 359
           G  +  ++ +  L  +I++ L  NI   +EF     LW+ Q ++
Sbjct: 455 GMHSSNDLSIRSLAVEIHTTLRYNIYQKQEFGPPVSLWVYQALF 498


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 201 VAFSFCLSLVAITDNTESTTISQLASQTMYLPLLA 305
           V F  C  L + T NTE   +S LASQT Y PL +
Sbjct: 364 VLFFDCDRLFSTT-NTEMF-VSTLASQTGYFPLFS 396


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 55  CQRSTFYVFICSLREFLYDNSLAN*KLSRLN 147
           C R  F V + +  +FL D S +N   SRL+
Sbjct: 82  CGRRLFLVCLMAATKFLQDRSFSNRAWSRLS 112


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 463 LTPLDTDINSVLESNIDLDEEFKENYE 383
           L+  D+ +N   E N  LD+ FK+ YE
Sbjct: 441 LSIFDSFVNKFSELNDSLDQFFKKKYE 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,254
Number of Sequences: 5004
Number of extensions: 35237
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)