Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   4.0  
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198...    27   6.9  
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    27   9.1  
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024...    27   9.1  

>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 451  DTDINSVLESNIDLDEEFKENYELWLEQE 365
            + +IN   + N+DLD+EF E +   +E E
Sbjct: 978  EDEINEGDDENLDLDDEFAEGHSTHIEME 1006


>02_05_0459 +
           29217728-29217919,29218095-29218190,29219785-29219895,
           29219984-29220293,29220745-29220835,29220976-29221285,
           29221469-29221617,29221914-29222418
          Length = 587

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 235 IATRDRQNENATITDRL*GSSNSPRPGSHNLIYLIFNWLDYYHIKTLLKN 86
           +AT    + +A ITDR+      P PG      L+  +L++Y +K   KN
Sbjct: 452 LATNRPSDLDAAITDRIDEVIEFPLPGEEERFQLLRLYLNHYMLKEDGKN 501


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 415 LCYSPGHCLCLCPRESDQFLVRYLYHISCG 504
           LC   GH L  CP ++D+ L ++ Y  +CG
Sbjct: 99  LCRQRGHSLKNCPDKNDENLKKFCY--NCG 126


>02_05_0497 -
           29502012-29502101,29502128-29502197,29502302-29502411,
           29502530-29502641,29503341-29503498,29503592-29503807,
           29504127-29504354,29504722-29504801,29504886-29505056,
           29505179-29505281,29505369-29505551,29506313-29506813,
           29506935-29507100,29507517-29507566,29508047-29508127,
           29508291-29508398,29508874-29508939,29509053-29509109,
           29509442-29509507,29509917-29510006,29510850-29510975,
           29511681-29511717,29512192-29512250,29512562-29512615,
           29513294-29513428,29513542-29513612,29513720-29513957
          Length = 1141

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 183 YNLSVIVAFSFCLSLVAITDNTESTTISQL 272
           +   VI+  S CL LVA+  NT + +IS +
Sbjct: 653 FGTGVIIYHSDCLGLVAVDRNTVAVSISDI 682


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,117
Number of Sequences: 37544
Number of extensions: 190496
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)