Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     55   4e-08
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         27   7.1  

>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
 Frame = -2

Query: 517 VDRFNHRRYGTGTE---QEIDLTPLDTDINSVLESNIDLDEEFKENYELWLEQE 365
           VDRFN RRYG  +    ++ D  P+D +  SVL   ++L E+FK+NYE WLE+E
Sbjct: 302 VDRFNSRRYGLESPDVGEDEDYKPVDNNPLSVLGQRVELGEDFKQNYECWLERE 355


>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 13   YILHIFNNII*HQNCQRSTFYVFICSLREFLYDNSLAN*KLSRL-NYVT 156
            Y +  F+  I H    ++ FY  I SLREFL  +++AN  + R  +Y+T
Sbjct: 1143 YFMCSFSATIAHTFAPKTKFYERILSLREFLAKHNIANSLIQRTEDYLT 1191


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 514  DRFNHRRYGTGTEQEIDLTPLDTDINSVLESNIDLDEEFKEN-YELW-LEQEVYNNEINW 341
            D+ +  +YG   +QE  +  L++ + + LE     + E ++N  ++W LE +V   E+  
Sbjct: 1380 DQDSESKYGEFLDQENRIAELESSLKAALEGKAKAEAELQKNKSKIWDLEDDVKMLELKV 1439

Query: 340  DVL 332
            D L
Sbjct: 1440 DQL 1442


>SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 421 NIDLDEEFKENYELWLEQEVYNNEINWDVLLST*SLIF---LANRGKYMVWL 275
           N+   E F   YE+W+++EV  + + +  +L+    +F   L    KY +W+
Sbjct: 551 NVQYFENFTVQYEVWIQKEVARDYLAY--ILAPTEYVFTEGLVRHTKYRIWV 600


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 427 ESNIDLDEEFKENYELWLEQEVYNNEINWDVLLST*SLIFLANRGKYMVWLAS 269
           + NI   +E  EN      +E   +  N + +LS  SL F  NRGK  +WL S
Sbjct: 40  QQNIRRLKEKVENEARARVREAAGDASNTEWVLSKCSLQFGINRGKTFIWLLS 92


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 193  DRL*GSSNSPRPGSHNLI-YLIFNWLDYYHIK 101
            D + G+   PRP S NL+ Y+ ++W  + +++
Sbjct: 2168 DTIFGTPEEPRPASDNLVNYVYYHWSKHPYVR 2199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,014
Number of Sequences: 59808
Number of extensions: 240735
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)