Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 382 LWLEQEVYNNEINWD 338
           LW+EQ  Y+ ++ WD
Sbjct: 75  LWVEQSWYDYKLKWD 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 382 LWLEQEVYNNEINWD 338
           LW+EQ  Y+ ++ W+
Sbjct: 79  LWVEQSWYDYKLRWE 93


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 382 LWLEQEVYNNEINWD 338
           LW+EQ  Y+ ++ W+
Sbjct: 79  LWVEQSWYDYKLRWE 93


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 406 EEFKENYELWLEQEVYNNEINW 341
           E+FK   + W++    NN  NW
Sbjct: 334 EQFKVIIDNWIKGTPQNNVPNW 355


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 382 LWLEQEVYNNEINWD 338
           +WLE E  +++  WD
Sbjct: 71  VWLEHEWQDHKFQWD 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,604
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)