Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    41   1e-04
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   5.2  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.0  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.0  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   KDGKLQPQEYQGGTVTVSNLGMY 69
           ++ KL+P+EYQGGT T+SNLGM+
Sbjct: 384 RNNKLKPEEYQGGTFTISNLGMF 406


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 7   GKLQPQEYQGGTVTVSNLGMYG 72
           GKL  ++   GT T+SN G++G
Sbjct: 357 GKLAIEDMASGTFTISNGGIFG 378


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 374 ADFSLPFSSISRHLNTHSSLSHIVIHTLH 288
           A F  PF+ +S HL++ SSLS    H+ H
Sbjct: 129 ASFHRPFTDVSAHLSS-SSLSKYNHHSNH 156


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 155 SIIFIIVKTPSKTRCHMFTQLNV--DKEYIPYIPRFDTVT 42
           +I+ +++++P  TR H+   LN+    ++  Y P F   T
Sbjct: 90  NILPVLLQSPMSTRSHLMAILNIILSTDFPEYWPGFSEYT 129


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 362 LPFSSISRHLNTHSSLSHIVIHTLHPCLLRSTSSPST 252
           +P S+   H   HS L +++   +HP    + +SP++
Sbjct: 107 IPVSASRHHKPHHSGLKNLLEKAMHPGHKSNANSPTS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,036
Number of Sequences: 5004
Number of extensions: 40952
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)