Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 37 0.011
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 36 0.015
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 36 0.015
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 36 0.015
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 36 0.026
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 29 2.3
03_04_0174 - 18044516-18046327 29 2.3
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 3.0
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 28 4.0
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 28 5.2
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 27 6.9
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 27 6.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 27 6.9
06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824... 27 9.1
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 1 KDGKLQPQEYQGGTVTVSNLGMYGMYSLSTFSCV 102
+D L+P++Y+GGT TVSNLG G + + F +
Sbjct: 402 RDNSLKPEDYEGGTFTVSNLG--GPFGIKQFCAI 433
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 10 KLQPQEYQGGTVTVSNLGMYGM 75
+LQP EY GT T+SNLGM+G+
Sbjct: 396 QLQPDEYSSGTFTLSNLGMFGV 417
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 10 KLQPQEYQGGTVTVSNLGMYGM 75
+LQP EY GT T+SNLGM+G+
Sbjct: 381 QLQPNEYSSGTFTLSNLGMFGV 402
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 1 KDGKLQPQEYQGGTVTVSNLGMYGMYSLSTFSCV 102
+D L+P++Y+GGT T+SNLG G + + F +
Sbjct: 1948 RDNSLKPEDYEGGTFTISNLG--GPFGIKQFCAI 1979
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 35.5 bits (78), Expect = 0.026
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 1 KDGKLQPQEYQGGTVTVSNLGMYGMYSLSTFSCV 102
+D L+P +Y+GGT T+SNLG G + + F +
Sbjct: 442 RDNSLKPDDYEGGTFTISNLG--GPFGIKQFCAI 473
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 4 DGKLQPQEYQGGTVTVSNLGMYGMYSLSTFSCVNI*HLVLDGVLTIIK 147
+G L E GGT T+SN G+YG SL + +N + G+ +I++
Sbjct: 343 EGALSIDEMAGGTFTISNGGVYG--SLISTPIINPPQSAILGMHSIVQ 388
>03_04_0174 - 18044516-18046327
Length = 603
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 299 HTLHPCLLRSTSSPSTLH*HFHTSPSQSHA 210
H +P STSSPS+ H H HT SH+
Sbjct: 29 HKSYPSSRGSTSSPSSHHTHNHTYYHHSHS 58
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -1
Query: 332 NTHSSLSHIVIHTLHPCLLRSTSSPSTL---H*HFHTS-PSQSHASSLYASHDH 183
N H+ H H P L ST + H H H P SH + +A HDH
Sbjct: 847 NDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIGSHCADKHACHDH 900
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 299 HTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCELFSIIFII 138
+T H L+ S P + HF SP Q + L S H +VC + +F +
Sbjct: 420 YTAHSSLVHSFYVP-VVKFHFEPSPMQVLVTELPKSFSHFITNVCAIIGGVFTV 472
>06_03_0092 +
16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 389 GGVGTADFSLPFSSISRHLNTHS-SLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSH 213
GG G +F ISR + H SL I H L+ S TLH H H P H
Sbjct: 111 GGQGEREFQAEVEIISRVHHRHLVSLVGYCIAEDHRLLVYDFVSNDTLHHHLHGHPRIIH 170
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 276 KKTWMECVNDDMRERGVSIEMTADRREWKRKISC 377
+KTW + V +D R+ G + T KR +SC
Sbjct: 466 RKTWADMVEEDERQLG-DVSSTIGMDTTKRNVSC 498
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Frame = -2
Query: 268 PLPPLPCTSISIHLLV----SHMHLL 203
PL PLP TS H+L+ SH HLL
Sbjct: 921 PLSPLPWTSSPCHVLIKEVGSHFHLL 946
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 303 HSHTPSMSSSVDLFPLYLAL 244
H H P+ SS DLF LYL +
Sbjct: 32 HHHHPARSSIADLFTLYLGM 51
>06_03_0954 -
26281937-26282143,26282232-26282286,26282430-26282482,
26282587-26282663,26282734-26282857,26282947-26283072,
26283463-26283616,26283709-26283817,26283911-26283974,
26284782-26284898
Length = 361
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 347 ISRHLNTHSSLSHIVIHTLHPCLLRST 267
I H+NT SSLS + L CL ST
Sbjct: 287 IHEHINTESSLSAVCERVLDRCLAPST 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,391
Number of Sequences: 37544
Number of extensions: 277534
Number of successful extensions: 737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -