Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 45 3e-05
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 38 0.007
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 38 0.007
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 37 0.012
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 32 0.25
SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 32 0.33
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 30 1.0
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 30 1.0
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2) 30 1.0
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 2.3
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 29 2.3
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06) 29 3.1
SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2) 28 5.4
SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083) 28 5.4
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 27 7.1
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 27 7.1
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 27 7.1
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 27 7.1
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08) 27 9.4
SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 45.2 bits (102), Expect = 3e-05
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 237 EMLVQGRGGRGRPKKTWMECVNDDMRERGVSIEMTADRREWKRKISCA 380
+ +++G+ RGRP+K W E + +D++ G++ T DR WK K++ A
Sbjct: 578 DFIIEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQDRVRWKLKLNHA 625
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSI----EMTADRREWKRKISCADPT 389
GR GRPK TW + ++ E +++ M DRR+WKR ++ PT
Sbjct: 17 GRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCPT 66
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGV----SIEMTADRREWKRKISCADPT 389
G+ GRPK TW + ++ E G+ ++++ DR+EW+ +++ PT
Sbjct: 611 GKRKLGRPKTTWRRTIQAELLEMGLTWGKALKVAKDRQEWRHRVAALFPT 660
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGV----SIEMTADRREWKRKISCADPT 389
G+ GRPK TW + ++ E G+ ++++ DR+EW+ +++ PT
Sbjct: 225 GKRKPGRPKTTWRRTIQAELLEMGLTWGEALKVAKDRQEWRHRVAALFPT 274
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 1 KDGKLQPQEYQGGTVTVSNLGMYGMYSLS 87
+D KL E+ GG++T+SNLGM+G+ S
Sbjct: 289 RDNKLHEHEFHGGSLTLSNLGMFGVTEFS 317
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSI----EMTADRREWKRKISCADPT 389
GR GRPK TW + ++ + +++ M DRR+WKR ++ PT
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCPT 66
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSI----EMTADRREWKRKISCADPT 389
GR GRPK TW + ++ +++ M DRR+WKR ++ PT
Sbjct: 72 GRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCPT 121
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSIEMTADRR 353
GR +GRP+KTW + D++ G+ + ++R+
Sbjct: 76 GRRMKGRPRKTWADATLSDLKTAGLKASVASNRK 109
>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSI----EMTADRREWKRKISCADP 386
GR GRPK TW + ++ + +++ DRR+WKR ++ P
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 347 ISRHLNTHSSLSHIVIHTLHPCLLRS-----TSSPSTLH*HFHTSPSQSHASS----LYA 195
++RHL + SH+ + T HP + S TS P H H + S H ++ +
Sbjct: 2 VTRHLTQFVTTSHLHVTTSHPHVTTSHLHVTTSHPHVTTSHLHVTTSHPHVTTSDLHVTT 61
Query: 194 SHDHTTLS 171
SH H T S
Sbjct: 62 SHLHVTTS 69
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 326 HSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLY--ASHDHTTLS 171
H + SH+ + T HP + S +T H H TS S L+ SH H T S
Sbjct: 23 HVTTSHLHVTTSHPHVTTSHLHVTTSHPHVTTSDLHVTTSHLHVTTSHLHVTTS 76
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 326 HSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLY--ASHDHTT 177
H + SH+ + T HP + S +T H H TS S L+ SH H T
Sbjct: 37 HVTTSHLHVTTSHPHVTTSDLHVTTSHLHVTTSHLHVTTSHLHVTTSHLHVT 88
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 219 LTRRCMEMLVQGRGGRGRPKKTWMECVNDDMRERGVS---IEMTADRRE-WKRKI 371
+TR+ + QG+ RGRP+ TW ++ D ++ G + +E A R+ W+ +
Sbjct: 426 ITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNRDAWRELV 480
>SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSI----EMTADRREWKRKISCADP 386
GR GRPK TW + ++ + +++ DRR+WKR ++ P
Sbjct: 17 GRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Frame = -1
Query: 314 SHIVIHTLH------PCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCELFS 153
+HI + T H CL T + T H H + H + H H T++ C
Sbjct: 420 NHITVTTCHNHTTVTKCLNHITVT--TCHNHITVTTCHDHIP-VTTCHYHITVTTCHNHI 476
Query: 152 IIFIIVKTPSKTRCHMFTQLNVDKEYIPYIPRFDTVTVPPWY 27
+ + + T CH + ++IP + +T P W+
Sbjct: 477 TVTKCLNHITVTTCHNHITVTTCHDHIPVTTCHNHITAPTWH 518
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 252 GRGGRGRPKKTWMECVNDDMRERGVSIE----MTADRREWKRKISCADPT 389
GR GRPK T + +++ G+S + +RREW+R I PT
Sbjct: 72 GRRKPGRPKTTLRRTIASKLKDLGLSWGHAQYLARNRREWRRTILALCPT 121
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 219 LTRRCMEMLVQGRGGRGRPKKTWMECVNDDMRERGVSIEMTAD 347
+TR+ + +G+ RGRP+ TW ++ D + G +++ D
Sbjct: 181 ITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMGKTMKDAVD 223
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 219 LTRRCMEMLVQGRGGRGRPKKTWMECVNDDMRERG 323
+TR+ + +G+ RGRP+ TW ++ D + G
Sbjct: 541 ITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMG 575
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -1
Query: 338 HLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCEL 159
H ++ SS+ I+ H HP S+SS +H H H S S S + H H S +
Sbjct: 268 HPSSSSSIIIIIHHHHHPS---SSSSIIIIHHHHHPSSSSSIIIIIIIHHHHHPSSSSSI 324
Query: 158 FSII 147
II
Sbjct: 325 IIII 328
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -1
Query: 338 HLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCEL 159
H + SS+ I+ H HP S+SS + H H PS S + + H H + S
Sbjct: 252 HHPSSSSIIIIIHHHHHP----SSSSSIIIIIHHHHHPSSSSSIIIIHHHHHPSSS---- 303
Query: 158 FSIIFIIV 135
SII II+
Sbjct: 304 SSIIIIII 311
>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
Length = 148
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 219 LTRRCMEMLVQGRGGRGRPKKTWMECVNDDMRERG 323
+TR+ + QG+ RGRP+ TW ++ D + G
Sbjct: 99 ITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKHMG 133
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -1
Query: 329 THSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLS 171
THS+L+H+ + H L ST + STL T + +H++ +++ H+TL+
Sbjct: 73 THSTLTHLTL--THLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHSTLT 123
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -1
Query: 338 HLN-THSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCE 162
HL THS+L+H+ + H L ST + S L T + +H++ Y++ H TL+
Sbjct: 9 HLTLTHSNLTHLTL--THSNLTHSTLTHSNL-----THLNLTHSTLTYSTLTHLTLTYST 61
Query: 161 LFSIIFIIVKTPSKTRCHM 105
L + T H+
Sbjct: 62 LTHLTITYSTITHSTLTHL 80
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 338 HLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLS 171
H + SS I+IH HP S+SS +H H H PS S ++ H H + S
Sbjct: 73 HHPSSSSSIIIIIHHHHPSSSSSSSSIIIIH-HHH--PSSSSIIIIHHHHHHPSSS 125
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 326 HSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDH 183
H S S I+I +H S+SS + H H S S +SS+ H H
Sbjct: 58 HPSSSSIIIIIIHHHHHPSSSSSIIIIIHHHHPSSSSSSSSIIIIHHH 105
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -1
Query: 347 ISRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLS 171
I H + SS+ I+IH H S+SS + H H S S S +S + H H + S
Sbjct: 54 IHHHHPSSSSIIIIIIHHHHHP--SSSSSIIIIIHHHHPSSSSSSSSIIIIHHHHPSSS 110
>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +3
Query: 249 QGRGGRGRPKKTWMECVNDDMRERG-----VSIEMTADRREWKRKI 371
+GR +GRPK TW V + E G ADR +WK +
Sbjct: 199 EGRRKQGRPKTTWRRTVERERGEAGWRNWDEVRSKEADREKWKTTV 244
>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 338 HLNTHSSLSH--IVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVC 165
H T S H V TLHPC ++ T P T+ +F + H +S Y S H C
Sbjct: 681 HPGTVQSTLHPGTVQSTLHPCTVQFTLHPGTVQ-YFASGYCSIHLASGYCS-IHFASGYC 738
Query: 164 ELF 156
++
Sbjct: 739 SIY 741
>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
Length = 421
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Frame = -1
Query: 350 SISRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHA------SSLYASH 189
S S H SS SH++I + H + S+S H +PS SH + S
Sbjct: 196 SWSHHHQVMSSPSHVIIKSHHHQVTPSSSHTIIKSHHHQVAPSPSHVIIKSCHHQVMPSS 255
Query: 188 DHTTLSVC 165
HT + C
Sbjct: 256 SHTIIKSC 263
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 344 SRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTL 174
S H S SH++I + H ++ S+S H S SHA + SH H +
Sbjct: 230 SHHHQVAPSPSHVIIKSCHHQVMPSSSHTIIKSCHHQVMSSSSHA--IIKSHHHQVM 284
>SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 63 NVRYVFFIYV*LCKHMTSRFGWSFXXXXXXXE*LTHAQRGMVM*CVE 203
+V + +IY+ H+T + GWSF + + A GM+M CVE
Sbjct: 402 SVLLLVYIYIRKIHHLTWK-GWSFSCLDDWRQFIGLAVPGMMMICVE 447
>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
Length = 323
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 272 STSSPSTLH*HFHTSPSQSHASSLYASHDHT 180
S+SS S+ H H+H H +LY HT
Sbjct: 200 SSSSSSSSHHHYHRHHLHHHHKALYKLRQHT 230
>SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 259 PLPCTSISIHLLVSHMHLLSTHHMTIPR*ACVSY 158
PLP T + L+ SH+ S HHM C+ Y
Sbjct: 91 PLPITDRILGLIESHIDPKSFHHMMFLAACCLEY 124
>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
Length = 585
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 224 SQSHASSLYASHDHTTLSVCELFSIIFIIVKTPS 123
+Q+ A+S Y++ T S+CE+F ++FI +K S
Sbjct: 85 NQTKATSGYSTEFTTRPSMCEIFFLMFIWLKLAS 118
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 353 SSISRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQ--SHASSLYASHDHT 180
++I H+ ++ H ++H ++ + TSS H H H P + SS +SH H+
Sbjct: 533 TTIISHIVNTTTHHHHIVHIVNTTTIIVTSSKPLSHHHHHHHPHELPQPLSSSPSSHYHS 592
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -1
Query: 335 LNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTTLSVCEL 159
++ H+S++H+ HP + S +H H + + A+ L S H SV L
Sbjct: 1330 MHLHASVTHLPASVTHPPVYVKHLPTSVMHLHASVTHLPASATQLPVSVKHLPTSVMHL 1388
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 320 SLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTT 177
++SH HTLH S ++ TLH + S + H + + H T
Sbjct: 10 NMSHATRHTLHVTRYMSHATRQTLHVTRYMSQATCHTLHVTGNTSHAT 57
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 335 LNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSHASSLYASHDHTT 177
L+ + SH HTLH S ++ TLH +TS + H + H T
Sbjct: 103 LHVTGNTSHATCHTLHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHAT 155
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 383 VGTADFSLPFSSISRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HF-HTSPSQSHAS 207
+ A + P+ + + TH + H T HP + R+ S+P+T H H H S +H
Sbjct: 168 IAHASTTHPYITYASTPTTHPHIPHASTTTTHPYIARA-STPTT-HPHITHASTPTTHPY 225
Query: 206 SLYASHDHTTL 174
AS +L
Sbjct: 226 IARASTPKASL 236
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 362 LPFSSISRHLNTHSSLSHIVIHTLHPCLLR 273
LP +S+ R H ++H V+H HP +R
Sbjct: 33 LPRNSMRRECPLHDVIAHYVMHDEHPANVR 62
>SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)
Length = 480
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 382 TPPSEIRWRKRRREVTHGRLAP 447
TPP W K + +TH RL P
Sbjct: 240 TPPLTFTWLKNGKPITHRRLQP 261
>SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.1 bits (57), Expect = 9.4
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Frame = -1
Query: 359 PFSSISRHLNTHSSLSHIVIHTLHPCLLRSTSSPSTLH*HFHTSPSQSH-------ASSL 201
P S RH+ S S + H H +LRS SS H SPS H S
Sbjct: 58 PSSYHHRHITIVISPS--IYHHRHITILRSPSSDHHRHITIDISPSSYHHRHMTIVISPS 115
Query: 200 YASHDHTTLSVCELFSIIFIIVKTPSKTRCHMFTQLNVDKEYIPYIPRFDTVTVPP 33
H H T+++ IIV +PS + + + + Y R+ T+ + P
Sbjct: 116 SYHHRHITIAISPSSYRHTIIVISPSS---YHHRHITIVRSPSSYHHRYITIVISP 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,478
Number of Sequences: 59808
Number of extensions: 338571
Number of successful extensions: 902
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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