Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.12 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.47 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 242 HFHTSPSQSHASSL 201
           HFH SPSQ+H+S++
Sbjct: 630 HFHQSPSQNHSSAV 643


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 248 H*HFHTSPSQSHASSLYASHDHTT 177
           H H H +P   H+ +    H H+T
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHST 446


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 292 SIHVFFGRPLPPLPCTSISIHLLVSHM 212
           S+HVFF   +  +P TS+ + LL  ++
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 292 SIHVFFGRPLPPLPCTSISIHLLVSHM 212
           S+HVFF   +  +P TS+ + LL  ++
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 127  GVLTIIKIIENNSHTLSVVW 186
            G  T I++ + + HTL V W
Sbjct: 978  GPPTSIRVDDLDQHTLKVTW 997


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,234
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)