Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   3.9  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   6.8  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   9.0  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   9.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 450 DFLCSHGCSYWLMAQTYCF*IRIHYHSGHWRAHQSSHS 337
           D  C  G S W+   T  F   IH HS    A + S +
Sbjct: 263 DIYCISGSSDWVCVSTQHFHCNIHVHSVSGNAIRKSRN 300


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 93  FEKSKSRHMNLENLDKALHDLGMLSAITEARREYLRETKSNYSVMRLNT 239
           +EK  +   + E+L++   DLG +S   E ++E   + K      RL+T
Sbjct: 550 YEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESKRLST 598


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 144 KLYLNFQDSCGETCFSQNHCI 82
           +L +N  D CGE C    HC+
Sbjct: 508 RLVVNAPDLCGEWCDWYRHCL 528


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 90  DFEKSKSRHMNLENLDKALHDLGMLSAITEARRE-YLRETK 209
           DF       +N ENL++A+  L  ++     +R+ YLR TK
Sbjct: 308 DFSNQIEALLNTENLNEAISVLSQITVSQFPKRDYYLRITK 348


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 NSHPLSLGSLASASEFSLLV 332
           N+HPL L +  SAS+ S+++
Sbjct: 626 NAHPLRLSTEISASQLSMII 645


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 84  CNDFEKSKSRHMNLENLDKALHDLGMLSAITEARREYLRETKSNYS--VMRLNTRYVSN 254
           C+DF++++  H+N++ + K    L  ++   +   E + E ++ Y+  +  LN+ + S+
Sbjct: 85  CSDFDQNELFHVNVDMMQKVSSTLKQIA--RDWSTECVEERRTTYAPFIEELNSLFPSD 141


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 453 LDFLCSHGCSYWLMAQTY 400
           +++  SHGCS+W   + Y
Sbjct: 35  MNYALSHGCSFWDAGEFY 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,253
Number of Sequences: 5004
Number of extensions: 39947
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)