Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266...    29   3.0  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    27   9.1  
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296...    27   9.1  

>01_06_0645 +
           30826267-30826307,30826403-30826454,30826580-30826659,
           30826804-30826882,30826962-30827045,30827131-30827276,
           30827362-30827628,30827825-30827907,30828162-30828271,
           30828544-30829159,30829471-30829620,30829700-30829800
          Length = 602

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 198 RETKSNYSVMRLNTRYVSNVTVGYCMKRATNKNRLCPYVVPIRHRTKSENSD 353
           +ET SNYS  R  ++ ++N    Y  K++    R      P   + ++E+ D
Sbjct: 216 KETVSNYSSNREGSKEITNSATSYKSKKSERHGRSTTSEAPSSKKGENEDDD 267


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 222 HCS*TSFHVNIHASLQLLHSACL 154
           HC        IHASLQL+  ACL
Sbjct: 565 HCLHNGLESAIHASLQLISRACL 587


>04_01_0234 +
           2963364-2963520,2963931-2964053,2964134-2964205,
           2964709-2964979,2965301-2965380,2966075-2967292,
           2968137-2968315
          Length = 699

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 351 DALANDPSDNGCEFKSSMFEPSTSSYIHD 437
           DA  + P D   EF S + EP    ++H+
Sbjct: 65  DAKVHTPDDTYVEFDSGLLEPPLIDFVHE 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,119
Number of Sequences: 37544
Number of extensions: 239268
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)