Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)                     28   4.1  
SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)                     28   5.4  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56808| Best HMM Match : EGF (HMM E-Value=0.00024)                   28   5.4  
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)                       27   7.1  

>SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)
          Length = 349

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 384 IHYHSGHWRAHQSSHSWFCA*WALRKDTVCFY 289
           ++YH   +    S  +W  + W L +D  CFY
Sbjct: 233 LNYHEDIFPKSDSDQTWESSPWDLGEDATCFY 264


>SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)
          Length = 218

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 150 HVKLYLNFQD--SCGETCFSQNHCISS*IRFSQ*LGNMCE 37
           HVK  L  Q   SC + C  Q+ CIS     S+  G  CE
Sbjct: 47  HVKKRLEGQSQISCSQRCLQQDWCISVNYEVSRREGGACE 86


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 150 HVKLYLNFQD--SCGETCFSQNHCISS*IRFSQ*LGNMCE 37
           HVK  L  Q   SC + C  Q+ CIS     S+  G  CE
Sbjct: 388 HVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACE 427


>SB_56808| Best HMM Match : EGF (HMM E-Value=0.00024)
          Length = 164

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 150 HVKLYLNFQD--SCGETCFSQNHCISS*IRFSQ*LGNMCE 37
           HVK  L  Q   SC + C  Q+ CIS     S+  G  CE
Sbjct: 47  HVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACE 86


>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 150 HVKLYLNFQD--SCGETCFSQNHCISS*IRFSQ*LGNMCE 37
           HVK  L  Q   SC + C  Q+ CIS     S+  G  CE
Sbjct: 47  HVKKRLQGQSQMSCSQRCLQQDWCISVNYEVSRPEGGACE 86


>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 897

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 477 SRGTGIFSLDFLCSHGCSYWLMAQTYC 397
           S+  G + +  LC   CSYW +A+T C
Sbjct: 332 SKNEGRWIMCPLCDKQCSYWDLAKTTC 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,949
Number of Sequences: 59808
Number of extensions: 305597
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)