Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   3.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 384 CEFKSSMFEPSTSSYIHDCIKSPAKRCQSLEXSI*QSNHRXTRKHP 521
           C F S + E  TSS   +    P K+    + +   + +  TR+HP
Sbjct: 308 CYFSSDLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATREHP 353


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 190 SRLASVIALSMPKSCKALSKFSRFM 116
           S+  +VI   +PKS K  S F+RF+
Sbjct: 165 SQNIAVIEYRIPKSGKGFSLFARFL 189


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
          protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 71 LDLVNNWEICVKNSENKHH 15
          ++L NNW IC ++   K +
Sbjct: 22 VELPNNWRICDRSLPQKEY 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,160
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)