Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52250.1 68416.m05742 myb family transcription factor contain...    27   5.8  
At3g31950.1 68416.m04046 hypothetical protein                          27   7.7  
At2g08986.1 68415.m01009 hypothetical protein                          27   7.7  
At1g80040.1 68414.m09369 expressed protein                             27   7.7  
At1g65440.1 68414.m07424 glycine-rich protein                          27   7.7  

>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 294 NRLCPYVVPIRHRTKSENSDALANDPSDNGCEFKSSMFEPSTSSYIHDCIKSPAKRCQSL 473
           N +   V  ++ + + + SD   + PSD   E  S    PS+ +   + + SPAK+C  L
Sbjct: 196 NEISTPVRSLKIKNEHKFSDQRLSLPSDPHSECISLFERPSSENNYGNKVCSPAKQCNDL 255


>At3g31950.1 68416.m04046 hypothetical protein
          Length = 507

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 243 YVSNVTVGYCMKRATNKNRLCPYVVP 320
           Y+ N T  YC +   + +  CPYV P
Sbjct: 309 YMDNYTKCYCCRGLGHVSMYCPYVAP 334


>At2g08986.1 68415.m01009 hypothetical protein
          Length = 1218

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 114  HMNLENLDKALHDLGMLSAITEARREYLRETKSNYSVMRLNTRYVSNVTVGYCMKRATNK 293
            HM+L    KAL     +    +   ++    K+  S  +++T+  +++  GY MK   +K
Sbjct: 1155 HMDLGYTMKALRSKKKVDTKPKTHMDFGYTMKALRSKKKVDTKPKTHMGFGYTMKALRSK 1214

Query: 294  NRLC 305
             ++C
Sbjct: 1215 KKVC 1218


>At1g80040.1 68414.m09369 expressed protein
          Length = 248

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 111 RHMNLENLDKALHDLGMLSAITEARREYLRETKSNYSVMRLNTRYVSN 254
           +H   + L+ A H LG+L  +    +E LR  + N   +R+  + V +
Sbjct: 188 QHERQKALEDANHQLGLLKQLVPQYQEKLRNLEVNNYALRMQLQQVEH 235


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 84   CNDFEKSKSRHMNLENLDKALH-DLGMLSAITE-ARREYLRETKSNYSVMRLNTRYVSNV 257
            C + E   +RH + +N+D   H D   L  + E AR+E     K   S M ++ R+  N+
Sbjct: 1173 CKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKELVRKHFKSRMIVHPRF-QNI 1231

Query: 258  TVGYCMKRATNKN 296
            T     +  ++K+
Sbjct: 1232 TADQATEYLSDKD 1244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,869
Number of Sequences: 28952
Number of extensions: 201286
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)