Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 92 2e-19
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 41 7e-04
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 39 0.002
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 34 0.060
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 31 0.56
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 30 1.3
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477... 28 5.2
02_03_0356 + 18073794-18074052,18074054-18074163 27 6.9
03_05_0784 + 27678018-27678623,27678762-27678935 27 9.1
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 92.3 bits (219), Expect = 2e-19
Identities = 42/98 (42%), Positives = 69/98 (70%)
Frame = +3
Query: 207 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 386
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESV 64
Query: 387 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSV 500
+ + + SK ++S N+++ KQ I NACGT+ ++H++
Sbjct: 65 ASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAI 100
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 40.7 bits (91), Expect = 7e-04
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Frame = +3
Query: 240 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 362
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 363 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSV 500
S +L G++ + +F++KQ ++ NACGTIAL+H+V
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAV 244
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 240 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 365
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
Score = 34.3 bits (75), Expect = 0.060
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 423 EVSGNIFYMKQNISNACGTIALVHSV 500
++S +++ KQ + NACGT+ ++H++
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAI 217
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 34.3 bits (75), Expect = 0.060
Identities = 26/102 (25%), Positives = 53/102 (51%)
Frame = +3
Query: 213 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 392
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 393 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVXXNTDI 518
E + ++ + N+F+ Q I NAC T A++ + +I
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRPEI 97
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 31.1 bits (67), Expect = 0.56
Identities = 27/100 (27%), Positives = 57/100 (57%)
Frame = +3
Query: 213 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 392
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 393 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVXXNT 512
+E I ++ N+F+ KQ I+NAC T A+V SV N+
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNS 147
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 313 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSGLDSRGTKVSVAISVTL 176
S S+P +S++F TP+ NLF TSG T + TL
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTL 275
>05_01_0546 -
4769565-4769612,4769873-4770037,4770192-4770200,
4770412-4770680,4772931-4772994
Length = 184
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 174 YRVTEMATETLVPLESNPDVLNKFLQKLGVPNKW 275
+R T M L+PL + P +NKF Q L +W
Sbjct: 50 WRRTRMQPMLLLPLRARPRSINKFKQVLPQRQEW 83
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 143 AGAPVTYSVILQSD*NGDRNFSPS*IQSRCPEQVFAKARRTKQMEYCRCHGT*-S*NAFV 319
AGA + S + + D +++ S CP+ R+ + T S +A V
Sbjct: 10 AGATTSCSASKKPRASTDASYAESLRSKLCPDASILATLRSLASACSKSKLTGLSPSAGV 69
Query: 320 GTSPCAFCNATFPNF*CLRKSQK 388
S C +TFPN C+R S++
Sbjct: 70 SPSRCPPTRSTFPNLNCMRSSKR 92
>03_05_0784 + 27678018-27678623,27678762-27678935
Length = 259
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 91 YVFNSIVNLRRYFFICHCRCTGNLLS 168
YV V LRR C CRC G LLS
Sbjct: 37 YVLLVPVRLRRLRRGCRCRCLGPLLS 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,722
Number of Sequences: 37544
Number of extensions: 258581
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -