Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302E04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    77   8e-15
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    73   1e-13
AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    69   2e-12
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    37   0.008
Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    28   3.5  

>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
 Frame = +3

Query: 213 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 392
           LESNP+ +N FL+K+G+      VDV   D E L +VP P L+++L FP ++A E   K 
Sbjct: 12  LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70

Query: 393 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSV 500
            E E+   G++  G +F+M Q+  I NACGT AL HS+
Sbjct: 71  YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSL 106


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +3

Query: 213 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 392
           LESNP+ +N FL K+GV      VDV   D E L ++P P L+++L FP S   E   K 
Sbjct: 11  LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69

Query: 393 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSV 500
            E E+   G++  G IF+M  K+ I +ACGT +L HS+
Sbjct: 70  YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSL 105


>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
 Frame = +3

Query: 210 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 389
           PLESNP V+N  ++K+GV      VDV+  D E++    +P  +V+L FP       +KK
Sbjct: 7   PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56

Query: 390 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVXXNTDII 521
            +E    I  + +    ++F+MKQ ISNACGT AL HS+    D I
Sbjct: 57  VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRI 102


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   LSFYYFENIIRF-VKLLPFY*LITFINSTIWYVFNSIVN 114
           LS  +   ++RF V+ LPF+ L+  +N+++W++ NS+VN
Sbjct: 118 LSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN 156


>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 25/94 (26%), Positives = 45/94 (47%)
 Frame = +3

Query: 213 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 392
           +ES+P V  + L+  GV     + ++  LD +    + RP   ++ LF         ++ 
Sbjct: 10  IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59

Query: 393 EENEILSKGQEVSGNIFYMKQNISNACGTIALVH 494
           +E   +   ++   NIF+  Q I NAC T AL++
Sbjct: 60  DETTGIPSDKQ---NIFFAHQTIQNACATQALIN 90


>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 174 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 311
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 155 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 174 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 311
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 180 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 174 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 311
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 564 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 167 LSRLPVHRQ*QMKKYLRRFTIELKTYQIVELMK 69
           L R+P H   Q+++YL  +++  K  +IV L K
Sbjct: 572 LERVPTHLTDQIREYLANYSLRTKFRKIVSLSK 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,541
Number of Sequences: 27780
Number of extensions: 247859
Number of successful extensions: 634
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)