Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 196 1e-51
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 93 3e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 4e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 1e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 2e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 60 3e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 1e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.97
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 9.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 196 bits (479), Expect = 1e-51
Identities = 89/98 (90%), Positives = 94/98 (95%)
Frame = -2
Query: 517 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 338
TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKY
Sbjct: 278 TYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKY 337
Query: 337 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
SVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 338 SVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 92.7 bits (220), Expect = 3e-20
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Frame = -2
Query: 511 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERK 341
N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER
Sbjct: 333 NCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERS 391
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 227
Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.3 bits (219), Expect = 4e-20
Identities = 41/97 (42%), Positives = 68/97 (70%)
Frame = -2
Query: 514 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 335
+ SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++
Sbjct: 284 FKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHN 343
Query: 334 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 344 AWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 87.0 bits (206), Expect = 1e-18
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Frame = -2
Query: 514 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-K 341
Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 329 YQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATS 388
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESG 251
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 389 NAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.3 bits (172), Expect = 2e-14
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 12/100 (12%)
Frame = -2
Query: 514 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KI 368
+++I DVDIRK LY VLSGG++MY G+ R++KEI L P+ + K+
Sbjct: 279 FDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKV 338
Query: 367 KIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 251
KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 339 KIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 59.7 bits (138), Expect = 3e-10
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Frame = -2
Query: 511 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------M 374
N + +D+RK LY N VLSGG+T++ +R+Q+++ + +
Sbjct: 313 NVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGV 372
Query: 373 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 233
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 373 DVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 1e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = -2
Query: 487 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 308
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 307 SLSTFQQMWISKQEYDESGPSIVHRK 230
L + I++ EY E G +I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.2 bits (107), Expect = 1e-06
Identities = 20/89 (22%), Positives = 45/89 (50%)
Frame = -2
Query: 505 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 326
+ + ++ ++ L +N +++GG PG+ R+++E+T++ P I + W
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682
Query: 325 GGSILASLSTFQQMWISKQEYDESGPSIV 239
G S + F+ ++++EY E GP +
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 478 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 308
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 307 SLSTFQQMWISKQEYDESGPSIVHRK 230
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 331 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 230
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 406 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 296
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 339 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 244
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 333 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 247
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 272 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 358
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 333 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 247
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 300 LPSNKCGSRNKSTTSLAPPLYTGSAS 223
+P + STT + PPL T S+S
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS 56
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 304 LSTFQQMWISKQEYDESGPSIV 239
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 350 WRSNDLNLHCRWGESCD 400
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 336 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 169
P SVD S+PPS P S + S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,200
Number of Sequences: 5004
Number of extensions: 38637
Number of successful extensions: 125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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