Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 210 6e-55
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 210 6e-55
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 210 6e-55
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 210 6e-55
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 210 6e-55
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 210 6e-55
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 210 6e-55
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 210 6e-55
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 210 6e-55
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 204 4e-53
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 201 2e-52
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 116 8e-27
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 107 5e-24
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 84 7e-17
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 75 3e-14
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 72 2e-13
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 46 2e-05
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.38
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.38
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.38
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 4.7
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 28 4.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 4.7
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 28 4.7
AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical... 27 8.1
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 234 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 293
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 294 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 264 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 323
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 324 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 210 bits (512), Expect = 6e-55
Identities = 97/99 (97%), Positives = 99/99 (100%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 204 bits (497), Expect = 4e-53
Identities = 96/99 (96%), Positives = 98/99 (98%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
T+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKIKIIAPPERK
Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERK 336
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 201 bits (491), Expect = 2e-52
Identities = 94/99 (94%), Positives = 96/99 (96%)
Frame = -2
Query: 520 TTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 341
TTY SIMKCDVDIRKDLYANTVLSGGT+M+PGIADRMQKEI LAPSTMKIKIIAPPERK
Sbjct: 277 TTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERK 336
Query: 340 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 116 bits (280), Expect = 8e-27
Identities = 51/95 (53%), Positives = 71/95 (74%)
Frame = -2
Query: 508 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 329
SIMKCDVD+R+ LY+N VLSGGTT++ G DR+ E+ +AP+ KI+I A ER W
Sbjct: 280 SIMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTW 339
Query: 328 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 224
IGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 340 IGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 107 bits (257), Expect = 5e-24
Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = -2
Query: 493 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIG 323
D+DIR L++N ++GG ++ G +R+ + P T+K+++ A P ERKY WIG
Sbjct: 344 DIDIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIG 403
Query: 322 GSILASLSTFQQMWISKQEYDESGPSIVHRKC 227
GSIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 404 GSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 83.8 bits (198), Expect = 7e-17
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 13/101 (12%)
Frame = -2
Query: 514 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTMKI 368
+ I D+D R D Y + VLSGGTTMYPG+ R++KE+ L A KI
Sbjct: 283 FGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKI 342
Query: 367 KIIAPPERKYSVWIGGSILASL--STFQQMWISKQEYDESG 251
+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 343 RIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 74.9 bits (176), Expect = 3e-14
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 16/104 (15%)
Frame = -2
Query: 505 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA----------------PSTM 374
I +C +D+R+ LY N VLSGG+TM+ A ++Q+++ L+ P +
Sbjct: 311 IQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPI 370
Query: 373 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 242
+++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 371 DVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 72.1 bits (169), Expect = 2e-13
Identities = 29/83 (34%), Positives = 56/83 (67%)
Frame = -2
Query: 514 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 335
+ +I++C +D R+ LY N L+GG ++ PGIA+++++E++ + P+T+ ++ P R +
Sbjct: 457 HEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNA 516
Query: 334 VWIGGSILASLSTFQQMWISKQE 266
++G I+AS STF+ IS Q+
Sbjct: 517 AYLGAQIVASASTFEDSCISLQQ 539
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 47.6 bits (108), Expect = 5e-06
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Frame = -2
Query: 505 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK 341
+ KC +D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K
Sbjct: 198 VSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIK 257
Query: 340 ----YSVWIGGSILASL-STFQQMWISKQEY 263
+ W+G S+L SL T ++ ++ +E+
Sbjct: 258 NTPLFVSWLGASLLGSLRETIERKSLTLEEW 288
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = -2
Query: 508 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKY 338
SI +C +R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+
Sbjct: 296 SICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT-- 353
Query: 337 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*T 218
W G L L+ + WI+++++DE G S+ F T
Sbjct: 354 HSWHCGQEL--LTASKVPWINRKDWDERGDSLEFSNFFQT 391
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = -2
Query: 508 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKY 338
SI +C +R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+
Sbjct: 296 SICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT-- 353
Query: 337 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*T 218
W G L L+ + WI+++++DE G S+ F T
Sbjct: 354 HSWHCGQEL--LTASKVPWINRKDWDERGDSLEFSNFFQT 391
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 329 PYGVLPLWRSNDLNLHCRWGESCD 400
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 329 PYGVLPLWRSNDLNLHCRWGESCD 400
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 329 PYGVLPLWRSNDLNLHCRWGESCD 400
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 165 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 257
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 268 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 167
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 165 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 257
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 349 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 188
+RK V G A +S F + K++ DE GPS RK S PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
>AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical
protein Y38E10A.22 protein.
Length = 305
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 303 REARIDPPIHTEYF--LSGGAMILIFIVDGARAVISFCIRSAIPGYMVVPPDNTVLAYKS 476
++A D P+ T Y L A + I+ + IS +RS +P Y+ N + A +
Sbjct: 26 QQAIADSPLFTAYMKLLKRQAELSPRILSALLSAISSIVRSHLPAYLKFQAKNGLTATEK 85
Query: 477 LRMST 491
L ST
Sbjct: 86 LIQST 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,542
Number of Sequences: 27780
Number of extensions: 233830
Number of successful extensions: 738
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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