Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D11f
(521 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 23 2.2
AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix... 23 2.2
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 22 3.8
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 22 3.8
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 6.6
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 6.6
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 6.6
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 6.6
EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetyla... 21 8.7
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 21 8.7
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 21 8.7
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 22.6 bits (46), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 113 GVLKPRPTSLWYLNGFLLRFTPIPFLRF 30
G L P+PTS+ ++ LL+F P ++F
Sbjct: 69 GALWPQPTSVTKISSTLLKF-PYRSIKF 95
>AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix
transcription factor protein.
Length = 249
Score = 22.6 bits (46), Expect = 2.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 263 PNTIGSRNGTGTCPYICRLASGTWXLVI 346
PN I NGTG RLA+G LV+
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVL 188
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.8 bits (44), Expect = 3.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 326 GTWXLVIL*RSANADLCPKQLDSMF*KFQRARARRSLSKNFNKL 457
GT+ +I + DLC K +D M R+R + + KL
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVADLQKL 1351
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 21.8 bits (44), Expect = 3.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 326 GTWXLVIL*RSANADLCPKQLDSMF*KFQRARARRSLSKNFNKL 457
GT+ +I + DLC K +D M R+R + + KL
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVADLQKL 1351
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 89 SLWYLNGFLLRFTPIPFLR 33
SL + ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 89 SLWYLNGFLLRFTPIPFLR 33
SL + ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 89 SLWYLNGFLLRFTPIPFLR 33
SL + ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 89 SLWYLNGFLLRFTPIPFLR 33
SL + ++ R +PIPF++
Sbjct: 264 SLGWWENYISRHSPIPFIK 282
>EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetylase
1 protein.
Length = 534
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 320 QGDKCTDMFLCRFSNL 273
+GD C D+ C S L
Sbjct: 55 EGDNCRDVIQCTSSGL 70
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 67 KPLRYHKDVGLGFKTPR 117
+P + HK + FK PR
Sbjct: 293 QPSQVHKQTAICFKAPR 309
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 20.6 bits (41), Expect = 8.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 321 ARRQMYGHVPVPFLEP 274
A R H PVP+L P
Sbjct: 156 ASRHHVDHQPVPYLTP 171
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,459
Number of Sequences: 336
Number of extensions: 2295
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -